Submitted SNP(ss) Details: ss24238088

Submitted SNP(ss) Details: ss24238088

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0977850
RefSNP(rs#)	rs2477703
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAAGGGTTGC GCAAGCAGGC CTGGCCGAGC AGTATTCCAG GCACACAAAC GCAGTTATTA
 CGTAGTCACC ACTGGTGGGA AAAAAGGA
 TTCAGAACTT AA
 Y
 GAGTTTAAAA CA
 ACACATGAGA GACGCTGAGG CAGGTGTGAG CGAATGTTTC CACCGGGGCC TGACTTTCAG
 GCCGCTTCTC CTCGGCAGCT GCCTCTGC

Submitted Frequency for ss24238088

There is no frequency submission for ss24238088.

dbSNP summary of Genotypes for ss24238088

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	44	44	T=0.63636363	C=0.36363637	C/T=0.54545456 T/T=0.36363637 C/C=0.09090909	Pr(chiSq=0.702,df=1) =0.403	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	T=0.97826087	C=0.02173913	T/T=0.95652175 C/T=0.04347826	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24238088

There is no individual genotype data for ss24238088.

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