Submitted SNP(ss) Details: ss24243583

Submitted SNP(ss) Details: ss24243583

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0981473
RefSNP(rs#)	rs1936378
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTGCTGCTGT GGCTGTGTAA AGAAGTCCCG ATTCCGAAAG CTCCGACGGG AACATTTACA
 GATGCAACAA CGTGCTGTCT GGGTTGGC
 TTCAACATTA CA
 M
 GAGAGGGGAG CA
 CGTGGGGGCA CGGGAGAAAC AAGACGGGCT GAGTTGCTAG TTGCGCAAGC TCAGTGACCG
 TGACAAGGGA GAGTCCTGAG GGTTTCTG

Submitted Frequency for ss24243583

There is no frequency submission for ss24243583.

dbSNP summary of Genotypes for ss24243583

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	44	44	C=0.54545456	A=0.45454547	A/C=0.54545456 C/C=0.27272728 A/A=0.18181819	Pr(chiSq=0.220,df=1) =0.655	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	40	40	C=0.97500002	A=0.02500000	C/C=0.94999999 A/C=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	44	44	C=0.72727275	A=0.27272728	C/C=0.50000000 A/C=0.45454547 A/A=0.04545455	Pr(chiSq=0.468,df=1) =0.527	Genotype Freq.

Submitted individual genotype for ss24243583

There is no individual genotype data for ss24243583.

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