Submitted SNP(ss) Details: ss24243614

Submitted SNP(ss) Details: ss24243614

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd0981486
RefSNP(rs#)	rs4648344
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	T/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTATAGAAAT TATTTTCAAA ATTTTAGTAA GCAGTTTGAT GTGAGCTCTA AAACGATTAT
 ACAAGTAAAA AGGTAGCATG TTTTCCAT
 TCAGCTGGGA GA
 Y
 GGCTGAGGTG CA
 GCAGGCGTGC AGTGATACTT GCTGAATGGA CAGAAGCCGT TCCCACATGG AGCTTCCATG
 ACATGCATTT ACACACCCCG ATTCTTTA

Submitted Frequency for ss24243614

There is no frequency submission for ss24243614.

dbSNP summary of Genotypes for ss24243614

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	T=0.54166669	C=0.45833334	C/T=0.41666666 T/T=0.33333334 C/C=0.25000000	Pr(chiSq=0.621,df=1) =0.439	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	C=0.76086956	T=0.23913044	C/C=0.60869563 C/T=0.30434781 T/T=0.08695652	Pr(chiSq=0.616,df=1) =0.439	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.97916669	C=0.02083333	T/T=0.95833331 C/T=0.04166667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24243614

There is no individual genotype data for ss24243614.

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