Submitted SNP(ss) Details: ss24244016

Submitted SNP(ss) Details: ss24244016

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd1072943
RefSNP(rs#)	rs6702619
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000001.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	T/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCTCTCTGTG CTGGTCTGCC AGCCTCCACA CATTATGTTT TGAAAGCACT TCCTCCAACT
 GCCGCTGAAC TGGCAGGGCG GATCTCCT
 GTGGATCAGT TT
 K
 TCCATTCTCT CA
 GTCCTGCTTA AGCACAGTGT TCTGTTGTCT GTCAACCTTC TGTTCTAGAC CAGGCCCCGC
 CCTTGACCTA CCAAGAAAGC TGGGAGCT

Submitted Frequency for ss24244016

There is no frequency submission for ss24244016.

dbSNP summary of Genotypes for ss24244016

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	T=0.52083331	G=0.47916666	G/T=0.37500000 T/T=0.33333334 G/G=0.29166666	Pr(chiSq=1.484,df=1) =0.251	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	T=0.86956519	G=0.13043478	T/T=0.73913044 G/T=0.26086956	Pr(chiSq=0.126,df=1) =0.752	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	T=0.91666669	G=0.08333334	T/T=0.83333331 G/T=0.16666667	Pr(chiSq=0.032,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss24244016

There is no individual genotype data for ss24244016.

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