Submitted SNP(ss) Details: ss24491020

Submitted SNP(ss) Details: ss24491020

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd4152858
RefSNP(rs#)	rs555001
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000015.5
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGCAGGGGGC AACTGTGAGT GGGCAGGGCT CCCGCTGCAC AGCTTCCTCC CTCCCCGGGC
 ACGCCAGGGA CCTCACCATG GCACACAC
 CACTCTGCTG AC
 R
 TAGACGGGGC TT
 CCCCGCAGAG CACAGTCTGT GGCTGGGTCA GTCTGGAAGT GCAGGCTCTT GTCTAGCAGC
 TTCAGGCAGA TGTCTATGAT TTTGTCTT

Submitted Frequency for ss24491020

There is no frequency submission for ss24491020.

dbSNP summary of Genotypes for ss24491020

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	G=0.62500000	A=0.37500000	A/G=0.50000000 G/G=0.37500000 A/A=0.12500000	Pr(chiSq=0.107,df=1) =0.752	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	40	40	A=0.69999999	G=0.30000001	A/G=0.50000000 A/A=0.44999999 G/G=0.05000000	Pr(chiSq=0.726,df=1) =0.403	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	44	44	G=0.75000000	A=0.25000000	G/G=0.59090906 A/G=0.31818181 A/A=0.09090909	Pr(chiSq=0.505,df=1) =0.479	Genotype Freq.

Submitted individual genotype for ss24491020

There is no individual genotype data for ss24491020.

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