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Submitted SNP(ss) Details: ss24524222           
Submitter
HandlePERLEGEN
Submitter SNP IDafd4535601
RefSNP(rs#)rs748741
Submitted Batch IDAFD_EUR_18-MAY-2004
Submitted DateAug 21, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_EUR_PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24524222|allelePos=101|len=201|taxid=9606|alleles='A/G'|mol=Genomic
 TGGTCTGGGC CGCTTCTTCA GCTCTGAGAC CACCGCAGCC CACTCCCTAG GTAAGGGGGA
 CCTGTCTGTG CCCCAGCAGC CCCCAGCG
 GTCCTGGTGA CC
 R
 TGCAGGGAGA CG
 CAAACATTCT CCCCACGTGT GTTTGGTCAG TTAGTGCAGG AAGATGCCTT TTTTAAGCCC
 CAGGGTTTTC TCATCTGTTC AGAATAGT

  Submitted Frequency for ss24524222 back to top
There is no frequency submission for ss24524222.


  dbSNP summary of Genotypes for ss24524222 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4646A=0.60869563
G=0.39130434A/G=0.52173913
A/A=0.34782609
G/G=0.13043478
Pr(chiSq=0.209,df=1)
=0.655
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4444A=0.68181819
G=0.31818181A/A=0.50000000
A/G=0.36363637
G/G=0.13636364
Pr(chiSq=0.577,df=1)
=0.479
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4646A=0.71739131
G=0.28260869A/G=0.47826087
A/A=0.47826087
G/G=0.04347826
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss24524222 back to top
There is no individual genotype data for ss24524222.

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