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Submitted SNP(ss) Details: ss24541426           
Submitter
HandlePERLEGEN
Submitter SNP IDafd2282871
RefSNP(rs#)rs701848
Submitted Batch IDAFD_EUR_18-MAY-2004
Submitted DateAug 21, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_EUR_PANEL
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24541426|allelePos=101|len=201|taxid=9606|alleles='T/C'|mol=Genomic
 ATTGAAAGAA TAGGGTTTTT TTTTTTTTTT TTTTTTTTTT TTTTAAATGT GCAGTGTTGA
 ATCATTTCTT CATAGTGCTC CCCCGAGT
 TGGGACTAGG GC
 Y
 TCAATTTCAC TT
 CTTAAAAAAA ATCATCATAT ATTTGATATG CCCAGACTGC ATACGATTTT AAGCGGAGTA
 CAACTACTAT TGTAAAGCTA ATGTGAAG

  Submitted Frequency for ss24541426 back to top
There is no frequency submission for ss24541426.


  dbSNP summary of Genotypes for ss24541426 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.56250000
C=0.43750000C/T=0.45833334
T/T=0.33333334
C/C=0.20833333
Pr(chiSq=0.114,df=1)
=0.752
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4646T=0.80434781
C=0.19565217T/T=0.65217394
C/T=0.30434781
C/C=0.04347826
Pr(chiSq=0.025,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848T=0.66666669
C=0.33333334T/T=0.45833334
C/T=0.41666666
C/C=0.12500000
Pr(chiSq=0.094,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss24541426 back to top
There is no individual genotype data for ss24541426.