Submitted SNP(ss) Details: ss24673634

Submitted SNP(ss) Details: ss24673634

Submitter
Handle	PERLEGEN
Submitter SNP ID	afd4025161
RefSNP(rs#)	rs1000021
Submitted Batch ID	AFD_EUR_18-MAY-2004
Submitted Date	Aug 21, 2004
Publication Cited	N.D.
First entry to dbSNP	Aug 10 2004 12:00:00:000AM

Resource Links
GenBank Accession	NC_000003.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AFD_CHIP_HYB
Ascertainment Samplesize	48
Population	AFD_EUR_PANEL

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 3
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATTTTAGTCT AAAAGATATT TTGGAAAATG TTCTGATTCT CTGACACTCA GGCTGGGACT
 AAGGTAGAAT CCAAGAGGTA ATGAAGGA
 TTGGGCCAAG TG
 S
 TTCCCAAAGT GC
 CTTGATGACA GATGTATTTA AGGAATGAGT ATGTAACGTT GTAGCTGAGG AGCTGTGCTA
 ATCAGAAAGA TTCCAGAGTA GCATTAGG

Submitted Frequency for ss24673634

There is no frequency submission for ss24673634.

dbSNP summary of Genotypes for ss24673634

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
AFD_EUR_PANEL - NORTH AMERICA	48	48	G=0.70833331	C=0.29166666	C/G=0.58333331 G/G=0.41666666	Pr(chiSq=2.028,df=1) =0.200	Genotype Freq.
AFD_AFR_PANEL - NORTH AMERICA	46	46	G=0.91304350	C=0.08695652	G/G=0.82608694 C/G=0.17391305	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.
AFD_CHN_PANEL - NORTH AMERICA	48	48	G=0.70833331	C=0.29166666	G/G=0.54166669 C/G=0.33333334 C/C=0.12500000	Pr(chiSq=0.897,df=1) =0.371	Genotype Freq.

Submitted individual genotype for ss24673634

There is no individual genotype data for ss24673634.

Disclaimer Privacy statement