NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss253509152           
Submitter
HandleBL
Submitter SNP IDSNP142040_1_152815345
RefSNP(rs#)rs2072660
Submitted Batch IDIrish1_chr1
Submitted DateAug 18, 2010
Publication CitedN.D.
First entry to dbSNPAug 18 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodIRISH_GENOME_SEQUENCING
Ascertainment Samplesize2
PopulationIrish
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss253509152|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 GGAGGATGGA CGAGTGAGCT ACCAGGAAGA GGGGCGCTGC CCCCACAGAT CCATCCTTTT
 GCTTCATCTG GAGTCCCTCC TCCCCCACGC CTCCATCCAC ACACAGCAGC TCCAACCTGG
 AGGCTGGACC AACTGCTTTG TTTTGGCTGC TCTCCATCTC TTGTACCAGC CCAGGCAATA
 GTGTTGAGGA GGGGAGCAAG GCTGCTAAGT GGAAGACAGA GATGGCAGAG CCATCCACCC
 TGAGGAGTGA
 Y
 GGGCAAGGGG CCAGGAAGGG GACAGGATTG TCTGCTGCCT CCAAGTCATG GGAGAAGAGG
 GGTATAGGAC AAGGGGTGGA AGGGCAGGAG CTCACACCGC ACCGGGCTGG CCTGACACAA
 TGGTAGCTCT GAAGGGAGGG GAAGAGAGAG GCCTGGGTGT GACCTGACAC CTGCCGCTGC
 TTGAGTGGAC AGCAGCTGGA CTGGGTGGGC CCCACAGTGG TCAGCGATTC CTGCCAAGTA
 GGGTTTAGCC

  Submitted Frequency for ss253509152 back to top
There is no frequency submission for ss253509152.


  dbSNP summary of Genotypes for ss253509152 back to top
No sufficient data to compute Hardy-weinberg probability for ss253509152.


  Submitted individual genotype for ss253509152 back to top
There is no individual genotype data for ss253509152.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement