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Submitted SNP(ss) Details: ss2624268452           
Submitter
HandleSYSTEMSBIOZJU
Submitter SNP IDSYSTEMSBIOZJU_SNV5028
RefSNP(rs#)rs2840531
Submitted Batch IDWhole_Genome_Sequencing
Submitted DateJan 06, 2017
Publication Cited[1] Whole genome sequencing of matched tumor, adjacent non-tumor tissue and corresponding normal blood samples of hepatocellular carcinoma patients revealed a TP53 (R249S) mutation associated with poor prognosis
First entry to dbSNPJan 6 2017 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodRESEQ
Ascertainment Samplesize2
Populationhepatocellular carcinoma patients
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2624268452|allelePos=26|len=51|taxid=9606|alleles='C/T'|mol=Genomic
 AATATCTTTT GTGCTGGAGA ATTTA
 Y
 GGCTGGACAC TCACATCATC GTCAA

  Submitted Frequency for ss2624268452 back to top
There is no frequency submission for ss2624268452.


  dbSNP summary of Genotypes for ss2624268452 back to top
No sufficient data to compute Hardy-weinberg probability for ss2624268452.


  Submitted individual genotype for ss2624268452 back to top
There is no individual genotype data for ss2624268452.