NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss275689002           
Submitter
HandleGMI
Submitter SNP IDGMI_AK_SNP_9163
RefSNP(rs#)rs2742686
Submitted Batch ID2009AK_SNP
Submitted DateDec 16, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodDIRECT DNA SEQUENCING
Ascertainment Samplesize2
PopulationAK_Koreans
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
Chromosome-1

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss275689002|allelePos=501|len=1001|taxid=9606|alleles='C/T'|mol=Genomic
 TCCCTAGCTC CCCTCACAGA CCCAGAGGCA GAGGCCTTCA GGGCCAGCAG TCAGGATGGG
 CAGATGAAGC CACAGTGTGC CAAGGCAGCG GCAAAGCCCC CGTGAGCACC AACCCAAGCC
 TTGCACCCCT GACATGTGGA GGCTTCTGAA ATTCCCTTGA CGCCTCAAAT CGAACACCGC
 CAGCCTCCAG CCTCAGAGGT GGCACCTGGC TTTCACTTCC CAAATGAACT GAAGCTCCAC
 CATGTTAGAT GACCTTGGAC CAAACCACGG GAACTTGATG GGCAGGAGGC TGGCCCGGGG
 GCCCTGGTGT GACCAGGAAG GTGGGAGGCC CCCGCGGCCA GGCCCTCTGC AGTCAGGTCC
 TGTGCAGTCA GGCCCTGTGT GGTCTTCCTT GAGGGGAAGT TTTCTGTTCC TTGGGTTCTG
 CAGGAGCAGG CAGGAGGCCC TGTGGGTCCA GGAGGGCGCC TCGGGGTCTG CCTGGCCAAT
 GTCAGAGGGG TAACGGCCCA
 Y
 CTGCAACTGG ACTCAGCTGT GGCCACAGGA TGGGGACAGG AGAGTGGCCA CACGTAGGAA
 ACCCAGGGTG AGGGACCTCA GCCTGCAGGG TCTGGGGACC ATTCCCAAGG AGCCCCTGAG
 CTGGGCTGAA TGGTGTTCAG AGATGGGGTT CCGGGGAAAC CTCCCTCACC CCAGTCAGAG
 CTGAGGCTGG GGGTGCAGCT CCGAGGGTCA CTCCTGGACT CCCTTGCTGG CATCCATGCC
 TCGGCTGGGT CAGGACAGAG CCGGGGTTGG GGGCCAATGC CCAGCAACCC CCTCCCCCAG
 GATCTGGAGC TGGACCTGGG GGGCTGGAGG CACCCTGTTG CCGCAGCAAG GAGAGGTGGG
 GTGCGCTTCA TCTCAGCTGC CCCAGGGCTG AGCTCAGCTT TGCCCGCTTT GTGCGGAGTC
 CACCGAGGGG GCCTGGGGGA CAGGCGAGAT TGGAAAGCGA TGGGGCCGGC GCCTGGGTGC
 TGCGTGGGAG CAAGTGCCTG

  Submitted Frequency for ss275689002 back to top
There is no frequency submission for ss275689002.


  dbSNP summary of Genotypes for ss275689002 back to top
No sufficient data to compute Hardy-weinberg probability for ss275689002.


  Submitted individual genotype for ss275689002 back to top
There is no individual genotype data for ss275689002.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement