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Submitted SNP(ss) Details: ss2812860208           
Submitter
HandleGNOMAD
Submitter SNP IDrs1229984
RefSNP(rs#)rs1229984
Submitted Batch IDgenome_batch_chr4
Submitted DateMay 18, 2017
Publication CitedN.D.
First entry to dbSNPMay 18 2017 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGNOMAD
Ascertainment Samplesize30992
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 9
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2812860208|allelePos=26|len=51|taxid=9606|alleles='T/C'|mol=Genomic
 GCCACTAACC ACGTGGTCAT CTGTG
 Y
 GACAGATTCC TACAGCCACC ATCTA

  Submitted Frequency for ss2812860208 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
FIN3494C=0.99685174
T=0.00314825
gnomad-FINGNOMAD
ASJ302C=0.76158941
T=0.23841059
gnomad-ASJGNOMAD
AFR8716C=0.98760897
T=0.01239100
gnomad-AFRGNOMAD
FEMALE13844C=0.94806415
T=0.05193586
gnomad-FEMALEGNOMAD
NFE15004C=0.96820849
T=0.03179152
gnomad-NFEGNOMAD
OTH980C=0.95306122
T=0.04693878
gnomad-OTHGNOMAD
MALE17106C=0.92926461
T=0.07073542
gnomad-MALEGNOMAD
EAS1616T=0.72091585
C=0.27908415
gnomad-EASGNOMAD
AMR838C=0.94033414
T=0.05966587
gnomad-AMRGNOMAD


  dbSNP summary of Genotypes for ss2812860208 back to top
No sufficient data to compute Hardy-weinberg probability for ss2812860208.


  Submitted individual genotype for ss2812860208 back to top
There is no individual genotype data for ss2812860208.

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