Submitted SNP(ss) Details: ss2827711

Submitted SNP(ss) Details: ss2827711

Submitter
Handle	TSC-CSHL
Submitter SNP ID	TSC1005569
RefSNP(rs#)	rs12529
Submitted Batch ID	001219_2b
Submitted Date	Jan 03, 2001
Publication Cited	N.D.
First entry to dbSNP	Jan 3 2001 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TSC-SANGER-19-26
Ascertainment Samplesize	10
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 10
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCCTACTTTT TTCTCCTAGC CTAAGAAACC TAGACCAGTG AGTCATCCAG AGTAAGGTAG
 GAACACGAAC CTTACAACCC AATACGGGTT TCACTTCTAC TAGGTTTATT CTTTTGAAAT
 CCGAAAACTA AAAGGAATTA TTCTTACCTC TGGAGGTGCA TAGGTGCCAA ATCCCAATAC
 AGGCATGAAG TGGCCATCAT TTAGCTTTAC ACACTG
 S
 TGTTTGGAAT CCATTCCCTG TCACTTGTCT GACTAGCAAA TGTTTGCTGC TGCTTCTCCT
 CAGAGATTAC AAAAACAATG GGCAGGAAAC CCCTCCCCCC ACCCCTGCAA ACTGACTGAT
 GGTTAACCAA TGGCATGTAG GAGGAGGTAC ATAGGCAGTC TTATATGGTC TGTGGAGAAA
 ATTGCATTCA GTTCATTTGT TTCTTATCAA AGAGAATTCC TAA

Submitted Frequency for ss2827711

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
COHORT_CONSORTIUM_B - NORTH AMERICA	76	G=0.56944001	C=0.43055999		CEPH-BATCHG9.4	CEPH
COHORT_CONSORTIUM_C - EUROPE	76	G=0.63158000	C=0.36842000		CEPH-BATCHG9.4	CEPH
COHORT_CONSORTIUM_H - CENTRAL/SOUTH AMERICA	76	C=0.85135001	G=0.14865001		CEPH-BATCHG9.4	CEPH
COHORT_CONSORTIUM_L - CENTRAL/SOUTH AMERICA	76	C=0.65278000	G=0.34722000		CEPH-BATCHG9.4	CEPH
COHORT_CONSORTIUM_J - EAST ASIA	76	C=0.82894999	G=0.17105000		CEPH-BATCHG9.4	CEPH
TSC_42_AA - NORTH AMERICA	84	C=0.56000000	G=0.44000000	0.493 +/-0.018	KWOK_Val_032503AA	KWOK
CEPH-TRIOS	606	G=0.60000002	C=0.40000001		CEPH-BATCHG9.3	CEPH
TSC_42_A - EAST ASIA	84	G=0.94999999	C=0.05000000	0.095 +/-0.061	KWOK_TSC_Val_032503A	KWOK
TSC_42_C - NORTH AMERICA	84		C=0.50000000 G=0.50000000	0.500 +/-0	KWOK_TSC_Val_032503C	KWOK
CEPH - MULTI-NATIONAL	184	G=0.61000001	C=0.40000001	0.468 +/-0.018	1_2004	SEQUENOM

dbSNP summary of Genotypes for ss2827711

No sufficient data to compute Hardy-weinberg probability for ss2827711.

Submitted individual genotype for ss2827711

There is no individual genotype data for ss2827711.

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