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Submitted SNP(ss) Details: ss283690           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000621-233373
RefSNP(rs#)rs636
Submitted Batch IDOVLP-000621-3
Submitted DateJun 30, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPJun 30 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:H_DJ1139I01 SequenceAccession1:AC004973 SequenceContigName1:Contig39 SequenceContigPosition1:51018 SequenceLocalName2:L78810 SequenceAccession2:L78810 SequenceContigName2:Contig1 SequenceContigPosition2:4445 PolyBayesConfidence:97

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss283690|allelePos=1001|len=2001|taxid=9606|alleles='A/T'|mol=Genomic
 tgagatcagg agtttaagac caggctagcc aacatggtaa aatcttgtct ctactaaaaa
 cacaaaaatt agccgggcgt ggtggtgcac acctgtggtc ccagctactc tggaggctga
 ggcaggagaa tcacttgaac ctgggaggtg gaggttgcag tgcaccgaga aagtgccatt
 gcactccagc ctaggtgaca agagtgaaac tccatctcaa aaaaaaagaa tgaaagaaag
 aaagaaagaa aagaaaagaa aagaaaagaa aagaCAGGGT GCTAGGAGAG AGTATAAGAG
 AGTATTCATA GACGTCctct ctggagagac aatatttaaa ctggaaagtt gaaggaagag
 aaggatctct atgtgaagac agggaagctc atttcaggca gaagaaactg catgtgcaag
 ggtcttgatg tagaaatatg ttggcatggg taaagaacag aagggctatt agaacttgat
 atgcttggga aataagagag agaaaaaaag tcaaagatga ctaactggga aactgagtga
 atagtgggag ctattgactg aggtgtggaa gaatctagga agaatgaaat gggtcagggt
 aggaagcaaa agttcagttt tagacatgtt aagttgggaa tcagtaaatc ttcaagtggg
 aaacaatata taagcttaga gctcaggaga aaggcgtggg ctggagatag aaatttggga
 gtcatcagta taggtggtat ttatagccct ggaactggaa aggattatta gcaagggagt
 aagtggggct agagaaggga gaagggccaa ggactgagtc ctggggcatc ctgactcaga
 gatttggCAt tgtcagatct gcattgtcat ctgagactct cccttcccaa ctatactgcc
 tttccccttt ctatccgcaa gtgtcaagtc tgtgtcatgg tctgaggcat ttcctgccca
 atcttgcttc ctcccctttt gtaattcaca agcagacccc
 W
 ataaacttct tacactgcta attctgtctc agtatctgct tcccagagga cctgaactga
 cacaAttggt accaggattg gtctgagaaa gcaggagatg attggggttt tggcactgga
 tcacttaatg aaatgaaatg aggacttctt cccaagtagt atgtggacca tggatagtcc
 ctggtacaag atggtggccc aactgctaaa actgtcactg gtagtaactt gggagagtgt
 tctggtaaaa agaaaatgct ctggcaggtg caatgaagag tagagatgaa taactttgca
 tagaaggact gtggacttgg ctggctgtca ttaaggtgca cagacaccat atgaagggac
 aattaagtgg ctgagggcag ttaactattg aaaactaagc atgaaggcca gaggacctct
 ttggtagctc ataaagatgt tcttatctcg ttcagtgaga cagcagaaaa acctagagat
 caaactcaga atgaccaagc ttcaaaggtg actgtatact catccaagcc aggtccacga
 tactcaagtc agcactccag ttaggcaaac ccaggatcgt ggcaaacagc atgggaatgt
 ctaagtgggt gctcccaaag attttgactc ctcagactgc tctgaacctt tagagcctgc
 agcagtaact catctctccc tattaagggc tggcatccac cccatccttt gtgggaagac
 agcacaaagg cctttccctt ataaggcacc aagatctgcc tccacctttt ctcctggcta
 taagaccagt aagtagggtt aagtcagggt gtaagcctgc cagggatgcg ctgggcctgg
 taagaaagga aaagatctat accccaaagg agttgtaaga tctagccaac atatactagg
 agtcagagag gtcccacgga ctggatttag agtgtttgag caatggggcc agaacataag
 actaggtaag ggagagttta ttgatttggg ggcactgtcc

  Submitted Frequency for ss283690 back to top
There is no frequency submission for ss283690.


  dbSNP summary of Genotypes for ss283690 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU224224A=0.63392860
T=0.36607143A/A=0.53571427
T/T=0.26785713
A/T=0.19642857
Pr(chiSq=37.259,df=1)
=0.001		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686A=0.72093022
T=0.27906978A/A=0.65116280
T/T=0.20930232
A/T=0.13953489
Pr(chiSq=18.348,df=1)
=0.001		Genotype
Freq.
HapMap-JPT170170A=0.64117646
T=0.35882354A/A=0.55294120
T/T=0.27058825
A/T=0.17647059
Pr(chiSq=32.304,df=1)
=0.001		Genotype
Freq.
HapMap-YRI220276T=0.78636366
A=0.21363637T/T=0.70289856
A/T=0.17391305
A/A=0.12318841
Pr(chiSq=30.567,df=1)
=0.001		Genotype
Freq.
HAPMAP-ASW98106T=0.59183675
A=0.40816328T/T=0.45283020
A/T=0.32075471
A/A=0.22641510
Pr(chiSq=5.622,df=1)
=0.020		Genotype
Freq.
HAPMAP-CHB8282A=0.59756100
T=0.40243903A/A=0.43902439
A/T=0.31707317
T/T=0.24390244
Pr(chiSq=4.761,df=1)
=0.050		Genotype
Freq.
HAPMAP-CHD168168A=0.65476191
T=0.34523809A/A=0.53571427
A/T=0.23809524
T/T=0.22619048
Pr(chiSq=18.821,df=1)
=0.001		Genotype
Freq.
HAPMAP-GIH176176A=0.53977275
T=0.46022728A/A=0.42045453
T/T=0.34090909
A/T=0.23863636
Pr(chiSq=23.767,df=1)
=0.001		Genotype
Freq.
HAPMAP-LWK178178T=0.67977530
A=0.32022473T/T=0.55056179
A/T=0.25842696
A/A=0.19101124
Pr(chiSq=14.700,df=1)
=0.001		Genotype
Freq.
HAPMAP-MEX100154A=0.88000000
T=0.12000000A/A=0.81818181
A/T=0.11688311
T/T=0.06493507
Pr(chiSq=17.090,df=1)
=0.001		Genotype
Freq.
HAPMAP-MKK284284T=0.56690139
A=0.43309858T/T=0.46478873
A/A=0.33098590
A/T=0.20422535
Pr(chiSq=48.447,df=1)
=0.001		Genotype
Freq.
HAPMAP-TSI172172A=0.59883720
T=0.40116280A/A=0.47674417
T/T=0.27906978
A/T=0.24418604
Pr(chiSq=20.798,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss283690 back to top
There is no individual genotype data for ss283690.

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