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Submitted SNP(ss) Details: ss28447335           
Submitter
HandleHG_BONN_CNS_SNPS
Submitter SNP IDtacr1_x5:595
RefSNP(rs#)rs881
Submitted Batch ID112
Submitted DateJul 02, 2004
Publication CitedN.D.
First entry to dbSNPJul 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodDS_SEQUENCING
Ascertainment Samplesize192
Populationeuro96
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28447335|allelePos=595|len=903|taxid=9606|alleles='C/G'|mol=Genomic
 CCCCCCNNCC NNNNTTTTTT TTGCGGCCCC TAAGATTCCA GTGTCATGAA TTTTAAAAAC
 AATAACACAA TCACGCTTGG GTATGTCCAT GTGTTAACAA GCTGATGCAG TGGTGGGCAG
 CCCTCTGAGC AGGCCGTCCC AAAGGGTCAC CTCTTCATCT GCTCGCTCTC CAGGTTCCGT
 CTGGGCTTCA AGCATGCCTT CCGGTGCTGC CCCTTCATCA GCGCCGGCGA CTATGAGGGG
 CTGGAAATGA AATCCACCCG GTATCTCCAG ACCCAGGGCA GTGTGTACAA AGTCAGCCGC
 CTGGAGACCA CCATCTCCAC AGTGGTGGGG GCCCACGAG
 GAGGAGCCAG AGGACGGCCC CAAGGCCACA CCCTCGTCCC TGGACCTGAC CTCCAACTGC
 TCTTCACGAA GTGACTCCAA GACCATGACA GAGAGCTTCA GCTTCTCCTC CAATGTGCTC
 TCCTAGGCCA CAGGGCCTTT GGCAGGTGCA GCCCCCACTG CCTTTGACCT GCCTCCCTTC
 ATGCATGGAA ATTCCCTTCA TCTGGAACCA TCAGAAACAC CCTCACACTG GGACTTGCAA
 AAAGGGTCAG TATGG
 S
 TTAGGGAAAA CATTCCATCC TTGAGTCAAA AAATCTCAAT TCTTCCCTAT CTTTGCCACC
 CTCATGCTGT GTGACTCAAA CCAAATCACT GAACTTTGCT GAGCCTGTAA AATAAAAGGT
 CGGACCAGCT TTTCCCAAAA GCCCATTCAT TCCATTCTGG AAGTGACTTT GGCTGCATGC
 GAGTGCTCAT TTCAGGATGA ATTCTGCAGC ACAGCTGCGG ACCCGGAAGA CTCATTTTCC
 TGGAGCCCCG TGTTA
 CTTCAATAAA GTTATCTCAG ATTAGCCTCC TGCAGCGGAG GTCTTGCCTC TCC

  Submitted Frequency for ss28447335 back to top
There is no frequency submission for ss28447335.


  dbSNP summary of Genotypes for ss28447335 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
euro96
EUROPE
176176G=0.78977275
C=0.21022727G/G=0.61363637
C/G=0.35227272
C/C=0.03409091
Pr(chiSq=0.326,df=1)
=0.584
Genotype
Freq.
HapMap-CEU226226G=0.85398233
C=0.14601770G/G=0.72566372
C/G=0.25663716
C/C=0.01769911
Pr(chiSq=0.095,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.77906978
C=0.22093023G/G=0.58139533
C/G=0.39534885
C/C=0.02325581
Pr(chiSq=0.948,df=1)
=0.343
Genotype
Freq.
HapMap-JPT172172G=0.85465115
C=0.14534883G/G=0.70930231
C/G=0.29069766
Pr(chiSq=0.671,df=1)
=0.439
Genotype
Freq.
HapMap-YRI226226G=0.78761059
C=0.21238938G/G=0.65486723
C/G=0.26548672
C/C=0.07964602
Pr(chiSq=4.817,df=1)
=0.050
Genotype
Freq.
HAPMAP-ASW9898G=0.83673471
C=0.16326530G/G=0.67346936
C/G=0.32653061
Pr(chiSq=0.559,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHB8282G=0.85365856
C=0.14634146G/G=0.70731705
C/G=0.29268292
Pr(chiSq=0.327,df=1)
=0.584
Genotype
Freq.
HAPMAP-CHD170170G=0.81764704
C=0.18235295G/G=0.67058825
C/G=0.29411766
C/C=0.03529412
Pr(chiSq=0.016,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176G=0.61931819
C=0.38068181C/G=0.48863637
G/G=0.37500000
C/C=0.13636364
Pr(chiSq=0.116,df=1)
=0.752
Genotype
Freq.
HAPMAP-LWK180180G=0.85000002
C=0.15000001G/G=0.69999999
C/G=0.30000001
Pr(chiSq=0.778,df=1)
=0.403
Genotype
Freq.
HAPMAP-MEX100100G=0.75000000
C=0.25000000G/G=0.56000000
C/G=0.38000000
C/C=0.06000000
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286G=0.84965032
C=0.15034965G/G=0.72727275
C/G=0.24475524
C/C=0.02797203
Pr(chiSq=0.252,df=1)
=0.655
Genotype
Freq.
HAPMAP-TSI176176G=0.83522725
C=0.16477273G/G=0.68181819
C/G=0.30681819
C/C=0.01136364
Pr(chiSq=1.158,df=1)
=0.294
Genotype
Freq.

  Submitted individual genotype for ss28447335 back to top
There is no individual genotype data for ss28447335.

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