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Submitted SNP(ss) Details: ss28461091           
Submitter
HandleKYUGEN
Submitter SNP IDQH05831
RefSNP(rs#)rs778594
Submitted Batch IDA040519
Submitted DateJul 07, 2004
Publication CitedN.D.
First entry to dbSNPJul 7 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFINDING BY SSCP AND SEQUENCING
Ascertainment Samplesize16
PopulationKG-POP3
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
PCR ConfirmedY
Variation
Frequency Submissionpopulation count: 2
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28461091|allelePos=320|len=340|taxid=9606|alleles='C/T'|mol=Genomic
 GGGGGCTTCC CTCAACTTCA GGGAGGTCGA GGTCGTGACC CTGGCGTCCC GAAGCCCGCC
 CGCCTCACCA CGCCGCGCCT CACCTGACGC CCTGGCTGCC GGGCGAGCGC TGACATAAGT
 GGATGCGAAT CTCACGCAGG CCCAGCTTTG CCCCGACTCC TCGACTTGCT GCGGCCGCCG
 CCATCCTTGT TAATATCGAA GTCGCCAATT CCAGGTCTTC AGGCCAAGTG CYCCGGTCTG
 ACCAACCGCG GACCCTAAAG CCTAGCCCAT AGGCTGCATG AGGCAGGGGC GGGGTAAAGC
 TTGGCCAATG ATATAAAAG
 Y
 ATTGTAGGAC CGCTGCGAGG

  Submitted Frequency for ss28461091 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
JPK2
EAST ASIA
200C=0.52999997
T=0.47000000
0.498 +/-0.006P040519KYUGEN
CP
MULTI-NATIONAL
156T=0.55000001
C=0.44999999
0.495 +/-0.011P040519KYUGEN


  dbSNP summary of Genotypes for ss28461091 back to top
No sufficient data to compute Hardy-weinberg probability for ss28461091.


  Submitted individual genotype for ss28461091 back to top
There is no individual genotype data for ss28461091.

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