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Submitted SNP(ss) Details: ss2874205           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0413204
RefSNP(rs#)rs1970168
Submitted Batch ID001219_3
Submitted DateJan 03, 2001
Publication CitedN.D.
First entry to dbSNPJan 3 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 3
Genotype Summarypopulation count: 17
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2874205|allelePos=822|len=1888|taxid=9606|alleles='C/T'|mol=Genomic
 TTGCTACATA AGTGTGTTTA AAATTGACAA CAGCAGTTAC TACCTATTGT CAATGCATTT
 CGTCAAAATC CTTTTGATGT ACCAAAAAAG AGAAAAGGTG GGGAAAGGGG GAAGAATATG
 TATGCTGTCA GACTTAAAGG AGAGTTCTTC CTATCCAGAG AGGAGCTGTG TTAAAATTAC
 CCCACTCGTG GATTTATATC TATCCCCACA CAGACACTTT TTTCTTTTGC ATGGGTCAAT
 GAAAAATTCA CTAAGGACCG GGGTTTAGAA ATCACTGAGT AGCTCAACTA ACCCTTCTTT
 GATATTTGGA TCCTTTTATA TAATCTCTGT AAGTGGTCTT CCGGTAATAC CTGAACATTG
 CAAGTAACGG GTGGTGATTT CCACCTTTTA ATGGTTTTGA GTACTAGAAA GTTTTTTGGC
 CTATAGAATT GAAATCTGAT TCTGCTTGTT TATTCAAATT CTACTGCCTT GGTGGCCTAC
 AGAACAAATC CTTCAGTCTC TGTCAGAGTT GGGCTCTTGG TGTAACGTGA CCCGTGAACA
 TGACCTGTGT AGAGTACAGC AGGAGTGTCT TGTCATAGGT TGCATGTTGC TTGCACTGAT
 GTAGTACAAG TTTGCATTTA CTTTTCTGGT GGCCAGACTC AACGAGTTTC CTTTTCGCTA
 AAACCTGCCG AGCCGTTAAT CACATGCTGC CATTGAACCT CGTCTTTCCA TCTTGCGCTG
 ATGTCATTGC AAAACCTAAC ATTTATTGCG CTGTGGTTTT GCTTTATTTT AGCTGATTCT
 TTCCATCATG CTTTTTAGAA TTTGATTATA TTATTTGGCA C
 Y
 TTTACCTGTC CTCCCAAAGA AATGCTGTCT GTACATTATT AGATCAGACT CTTTTATATC
 TTTACTTAAG CCGGTGATGA AATTGTTAAA CTGGCTGAAC AACACGAAGT GTGTCTCTGG
 AAGCTTCCCT CGAGGCTTAC AAGGAGTCAC ACTCTCGGTT ATAGTTAACT ACTAATGCTC
 TTCATATCTT ATAACTAGCC CATATAGCTC CACCTTTCCA CATGGATATC CTGAAAGAGT
 GTGTCAAACC TCCTTTGCTG GTTCTACTGA CCAAGTTATG CTGAGTAATA ATGAGTTCAT
 TTTCAGTGTG TCCCTAGTAA CGAGCACTCT CTTCTGCATA TGATTAAGAA AATGTGTTAA
 ATGACTGACT GGATTGAGAC ACTAGGGTCA CACTGTGATC TGTGACCTCC GGAGGCCTTA
 GGAACTGCAG TGCTTCTAGG AAAAATCAGA ATATTGTTGG ACTTTCTTCA GCTTATTTTT
 TGGTTTGGTA TTCTCTTGTG TTGAATTGCT TTCAGATAGT GGGGAAGAAC ACCACAGTCT
 CTTCCGGTTT TGTTTTAATT GGTTGATATA CTTCTCTTCC TATTTTACTA ATAAACATTT
 AGCCAAAAGG GGTGTCTTGA ACTCTGCCCA TTAGATTACT CCATATTTTT CACTTCTACA
 TATTTGCTTA ATCTTCTGAG AAATATCCCC ATTTAGTTGA GTTCCTCAAG AAATCAGAAC
 AGTCCGAAGT AAGCTATCTG GTAGTTTATT CAAACTCTTA AGTAAAAATA TCTAGGTAAA
 GAGCCAGTGT TAAAAATTGT TATTGTGGAA AGTAAGAACT CCTGGGTGAA TAAAAGATTA
 TGTCTGCTGA GATGAACTAT TGTGTGGAGT TTTAAAAGAA AGTTCTGGTT AATGCTTAAG
 ACATAGTGTC CTGTGAAGTC AGCATAACTA CTTTCACTGT CTTCTGGAGG TGGTTTTGAT
 AACACATTTG GTTCCTTGTT GAACAGTGGG TATTCACATT GTTCAGGAAT AGCTTTGGGA
 TACTGTCCTC TCCGTATTGA AGTTTCTAAT AAGTAATTTT AGGAAT

  Submitted Frequency for ss2874205 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
TSC_42_A
EAST ASIA
84C=0.62000000
T=0.38000000
0.471 +/-0.036TSC-KWOK-TSC_42_A-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_AA
NORTH AMERICA
84T=0.61000001
C=0.38999999
0.476 +/-0.033TSC-KWOK-TSC_42_AA-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_C
NORTH AMERICA
84C=0.63999999
T=0.36000001
0.461 +/-0.041TSC-KWOK-TSC_42_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss2874205 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
Caucasian2020T=0.55000001
C=0.44999999T/T=0.40000001
C/C=0.30000001
C/T=0.30000001
Pr(chiSq=1.552,df=1)
=0.251
Genotype
Freq.
PDpanel4848C=0.52083331
T=0.47916666C/T=0.37500000
C/C=0.33333334
T/T=0.29166666
Pr(chiSq=1.484,df=1)
=0.251
Genotype
Freq.
HapMap-CEU220220C=0.50909090
T=0.49090910C/T=0.50909090
C/C=0.25454545
T/T=0.23636363
Pr(chiSq=0.038,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8484C=0.67857140
T=0.32142857C/C=0.52380955
C/T=0.30952382
T/T=0.16666667
Pr(chiSq=3.543,df=1)
=0.100
Genotype
Freq.
HapMap-JPT170170C=0.70588237
T=0.29411766C/C=0.48235294
C/T=0.44705883
T/T=0.07058824
Pr(chiSq=0.500,df=1)
=0.527
Genotype
Freq.
HapMap-YRI224224T=0.67410713
C=0.32589287T/T=0.46428570
C/T=0.41964287
C/C=0.11607143
Pr(chiSq=0.226,df=1)
=0.655
Genotype
Freq.
HAPMAP-ASW9898T=0.69387758
C=0.30612245C/T=0.48979592
T/T=0.44897959
C/C=0.06122449
Pr(chiSq=1.146,df=1)
=0.294
Genotype
Freq.
HAPMAP-CHB8080C=0.66250002
T=0.33750001C/C=0.44999999
C/T=0.42500001
T/T=0.12500000
Pr(chiSq=0.098,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176T=0.61931819
C=0.38068181C/T=0.44318181
T/T=0.39772728
C/C=0.15909091
Pr(chiSq=0.318,df=1)
=0.584
Genotype
Freq.
HAPMAP-LWK180180T=0.70555556
C=0.29444444T/T=0.50000000
C/T=0.41111112
C/C=0.08888889
Pr(chiSq=0.010,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286T=0.61188811
C=0.38811189C/T=0.42657343
T/T=0.39860141
C/C=0.17482518
Pr(chiSq=1.484,df=1)
=0.251
Genotype
Freq.
HAPMAP-TSI176176C=0.55681819
T=0.44318181C/T=0.45454547
C/C=0.32954547
T/T=0.21590909
Pr(chiSq=0.549,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss2874205 back to top
There is no individual genotype data for ss2874205.

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