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Submitted SNP(ss) Details: ss289814           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000621-266620
RefSNP(rs#)rs223201
Submitted Batch IDOVLP-000621-3
Submitted DateJun 30, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPJun 30 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AL050342 SequenceAccession1:AL050342 SequenceContigName1:Contig1 SequenceContigPosition1:50603 SequenceLocalName2:AC060828 SequenceAccession2:AC060828 SequenceContigName2:Contig17 SequenceContigPosition2:159 PolyBayesConfidence:97

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss289814|allelePos=356|len=586|taxid=9606|alleles='C/T'|mol=Genomic
 TCGGGTGGAT CATCAGGACT TCTGCCCCCA GGGGGTGCAG GTGTGTATCC CTGGTTGTAT
 GACCTTGGAC AGATCACTGC CTCTCTGGAT AGAGCGTCCC AGAGGCACAT CTATCAAATG
 CTTTTCTAGG TCTTAGCCCC AGAGCCCAGA ACTCCCAGGT TGGAATTGAC AAGAATGTAT
 TCCCTCCAAG GCTATTTAGT TGAGCACCTA CTAGGACCTT GGCTTGGTGG AAGGTGCCCA
 GGGATACAGG GGGAATGAGA AAAGCACGGC TTTGCAATCT AGTCGGAGAG ACATGGCAAA
 ATGTAGATGA ATACATCATT CCACATTCTG CAAAGAAGTG ATTCTAAACC ATGGG
 Y
 GTGTAATGAA GGGGCAAGTG GGGTGCAGTA CCGGGAAGGA ATGAGATGCT GGgtgccatt
 tagatgggtg gtcaggcagg gccatcgagg aaggtggcac ttgggtggag aactgagggc
 aggaaggagc CCTCTGTGAA AGGGAGGAGG CAGATGTGGC CGACAGTTAT CCCACCCTGC
 CCACTTCCTC TTACCCCTCG CTCTTCCTGG CAGTGCCAGC ATCCTTGGTG

  Submitted Frequency for ss289814 back to top
There is no frequency submission for ss289814.


  dbSNP summary of Genotypes for ss289814 back to top
No sufficient data to compute Hardy-weinberg probability for ss289814.


  Submitted individual genotype for ss289814 back to top
There is no individual genotype data for ss289814.

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