NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss2959749330           
Submitter
HandleGNOMAD
Submitter SNP IDrs4900
RefSNP(rs#)rs4900
Submitted Batch IDgenome_batch_chr19
Submitted DateMay 23, 2017
Publication CitedN.D.
First entry to dbSNPMay 23 2017 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGNOMAD
Ascertainment Samplesize30992
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 9
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2959749330|allelePos=26|len=51|taxid=9606|alleles='C/T'|mol=Genomic
 AGGAGAGCAA AGCCCTGTTC CGGAC
 Y
 ATCATCACCT ACCCCTGGTT CCAGA

  Submitted Frequency for ss2959749330 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
MALE17012C=0.61703503
T=0.38296497
gnomad-MALEGNOMAD
FIN3486C=0.63740677
T=0.36259323
gnomad-FINGNOMAD
NFE14898C=0.52718484
T=0.47281516
gnomad-NFEGNOMAD
FEMALE13776C=0.61686993
T=0.38313007
gnomad-FEMALEGNOMAD
OTH978C=0.59406954
T=0.40593046
gnomad-OTHGNOMAD
AFR8674C=0.77738070
T=0.22261932
gnomad-AFRGNOMAD
AMR834C=0.55515587
T=0.44484413
gnomad-AMRGNOMAD
ASJ302C=0.62251657
T=0.37748346
gnomad-ASJGNOMAD
EAS1616C=0.58415842
T=0.41584158
gnomad-EASGNOMAD


  dbSNP summary of Genotypes for ss2959749330 back to top
No sufficient data to compute Hardy-weinberg probability for ss2959749330.


  Submitted individual genotype for ss2959749330 back to top
There is no individual genotype data for ss2959749330.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement