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Submitted SNP(ss) Details: ss3050860           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC1135267
RefSNP(rs#)rs2127350
Submitted Batch IDTSC-CSHL-30_101052517
Submitted DateJun 07, 2001
Publication CitedN.D.
First entry to dbSNPJun 7 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-CSHL-30
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/!a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss3050860|allelePos=286|len=607|taxid=9606|alleles='G/T'|mol=Genomic
 TGCCTGCTTT AGCCTTTGTA TTTTGTAAAA CTGTTTCTAA TGGCCTTGTA TGGAACTTCT
 TCACCTAGGA ATTCTAATCA TATACTACTT ACATGATATG AGTCTTGAAC TTCAAATCTG
 GATTTTTCTA TTTAAACCAG AAAGTAAATA AATGTAATAA AAATAGAAAC ATACCAACAC
 AACTCCCCAA AACTATGTGC AGCAACTCTG GCTACACTCT CAGAGAGACC CCAACATTTT
 TGGTTACTTG GACATCCTGT AACTGATCAT TTTATTTTGC CACAC
 K
 CTTCCCCTAG CACACTCTTT CAAGTACAGT ATATAGCTTG CTTAAATTTC ACATTGAAAG
 TTTTGGAAAG CCATATGAAA TTATTCCAGA TAGCTGCAGG TTGCTAATAA AACCATAGTT
 AGGGATCACC AACTTAGTAA AAATTGAAAC TAGAGAAACA GTCTTCATAA TCTTTAGCCG
 AGGCAGTCCC TTCTTTCCAT ATTATCATCA CTTTCTGTTC AAAGCACATA CTTTTCATGC
 TTCTGTGTAT AGTTAAACAT GTTTCTATAC TCCGAAAAGT TGTCATATCC CAGAGCCATT
 CACATCATAA TTACAGTAGA G

  Submitted Frequency for ss3050860 back to top
There is no frequency submission for ss3050860.


  dbSNP summary of Genotypes for ss3050860 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.70833331
T=0.29166666G/G=0.51666665
G/T=0.38333333
T/T=0.10000000
Pr(chiSq=0.313,df=1)
=0.584
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888G=0.53409094
T=0.46590909G/T=0.47727272
G/G=0.29545453
T/T=0.22727273
Pr(chiSq=0.074,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8888G=0.72727275
T=0.27272728G/T=0.50000000
G/G=0.47727272
T/T=0.02272727
Pr(chiSq=2.984,df=1)
=0.100
Genotype
Freq.
HapMap-YRI120120G=0.60000002
T=0.40000001G/T=0.53333336
G/G=0.33333334
T/T=0.13333334
Pr(chiSq=0.741,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss3050860 back to top
There is no individual genotype data for ss3050860.

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