Submitted SNP(ss) Details: ss3177071

Submitted SNP(ss) Details: ss3177071

Submitter
Handle	WICVAR
Submitter SNP ID	WI-19341
RefSNP(rs#)	rs41115
Submitted Batch ID	06.26.01-n
Submitted Date	Jun 28, 2001
Publication Cited	N.D.
First entry to dbSNP	Jun 28 2001 12:00:00:000AM

Resource Links
GenBank Accession	NM_000038
Submitted Gene Name	APC
Submitted Gene ID	324
Submitted SNP Synonyms	G1465a7
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	cDNA
Method	MITOG-RT-SEQ
Ascertainment Samplesize	54
Population	MITOGPOP6

Allele
Observed Allele	A/G
Ancestral Allele
Allele Origin	T:Germline C:Germline
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y
PCR Confirmed	Y
In Expressed Sequence	Y

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCAAACAGCT CAAACCAAGC GAGAAGTACC TAAAAATAAA GCACCTACTG CTGAAAAGAG
 AGAGAGTGGA CCTAAGCAAG CTGCAGTAAA TGCTGCAGTT CAGAGGGTCC AGGTTCTTCC
 AGATGCTGAT ACTTTATTAC ATTTTGCCAC
 R
 GAAAGTACTC CAGATGGATT TTCTTGTTCA TCCAGCCTGA GTGCTCTGAG CCTCGATGAG
 CCATTTATAC AGAAAGATGT GGAATTAAGA ATAATGCCTC CAGTTCAGGA AAATGACAAT
 GGGAATGAAA CAGAATCAGA GCAGCCTAAA

Submitted Frequency for ss3177071

There is no frequency submission for ss3177071.

dbSNP summary of Genotypes for ss3177071

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
MITOGPOP6 - MULTI-NATIONAL	54	54	A=0.70370370	G=0.29629630	A/A=0.62962961 G/G=0.22222222 A/G=0.14814815	Pr(chiSq=11.224,df=1) =0.001	Genotype Freq.

Submitted individual genotype for ss3177071

There is no individual genotype data for ss3177071.

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