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Submitted SNP(ss) Details: ss32469473           
Submitter
HandleEGP_SNPS
Submitter SNP IDTP53-014783
RefSNP(rs#)rs1625895
Submitted Batch IDTP53-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize154
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469473|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GTGAGCAGCT GGGGCTGGAG AGACGACAGG GCTGGTTGCC CAGGGTCCCC AGGCCTCTGA
 TTCCTCACTG ATTGCTCTTA GGTCTGGCCC CTCCTCAGCA TCTTATCCGA GTGGAAGGAA
 ATTTGCGTGT GGAGTATTTG GATGACAGAA ACACTTTTCG ACATAGTGTG GTGGTGCCCT
 ATGAGCCGCC TGAGGTCTGG TTTGCAACTG GGGTCTCTGG GAGGAGGGGT TAAGGGTGGT
 TGTCAGTGGC CCTCC
 R
 GGTGAGCAGT AGGGGGGCTT TCTCCTGCTG CTTATTTGAC CTCCCTATAA CCCCATGAGA
 TGTGCAAAGT AAATGGGTTT AACTATTGCA CAGTTGAAAA AACTGAAGCT TACAGAGGCT
 AAGGGCCTCC CCTGCTTGGC TGGGCGCAGT GGCTCATGCC TGTAATCCCA GCACTTTGGG
 AGGCCAAGGC AGGCGGATCA CGAGGTTGGG AGATCGAGAC CATCCTGGCT AACGGTGAAA
 CCCCGTCTCT ACTGA

  Submitted Frequency for ss32469473 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90154G=0.93506497
A=0.06493500
TP53-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469473 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90154154G=0.93506491
A=0.06493507G/G=0.87012988
A/G=0.12987013
Pr(chiSq=0.047,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469473 back to top
There is no individual genotype data for ss32469473.

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