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Submitted SNP(ss) Details: ss3288652           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC1426325
RefSNP(rs#)rs203674
Submitted Batch IDTSC-CSHL-31_101091916
Submitted DateSep 20, 2001
Publication CitedN.D.
First entry to dbSNPSep 20 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodTSC-CSHL-31
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 3
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss3288652|allelePos=499|len=997|taxid=9606|alleles='G/T'|mol=Genomic
 GAAGTGAATA AGGTATTCAT GTATACTGTT TTCATTTTTT AATGTCTGTG CTTAATATGA
 GGTCTAGTTT ACAAAAAATG TTAGTCCTCA TAAAAAAGCt aattttatac taaattttta
 ttaattattc ttttaagatt ttcttattat taaaGAGAAA ATGTCTTGTA TAACATAGGA
 ATTTATATTT TCAGTCTTTT TCTCCTTTTT ACATATGTCT CAACTACGAA TTAGTTTGGA
 CTCTTAATTT ACAAAATTCT GTTATGATTT TCTTTAAAAA ATAATGTATA CCTGTAATGG
 CCTGTTTTAT TACTAGCATT GTCATAAATG CTTTAGTATA AATGAATTAA GAAAAATGTT
 TTTAAAATAT ATTTTGGGGC TTAAGCAATG AAAAAAAATG TTGTGTAGAA AGATATACTT
 TCACTTTTGA CAACTATTTT ACGACAACAA ATTCTCACCA GTCATAGATT ATTTTTGTAC
 GGTACCTATT TATTAGTA
 K
 ATCTAATCAA TAAAGCTTTT TCTTCTTAGA ATGGGAAATA CTCAGATTGT TTATTAGATG
 ACATTAGAAA TGACATTCTA AATTTTTTAT GCACTAGAAT CTTGTGATAT CCCAGTATTT
 ATGAATGCCA GAACTAAAAA TGACTTCACA TGGTTTAAGC TGAATGACAC ATTGGACTAT
 GAATGCCATG ATGGTTATGA AAGCAATACT GGAAGCACCA CTGGTTCCAT AGTGTGTGGT
 TACAATGGTT GGTCTGATTT ACCCATATGT TATGGTAAGT ACTGGTTTTT CAGAAATTCA
 TTTTCAAAAT GAAAATAAAT CTGTTTTCCA ATTTTAAAAA TTTGAATTAT ATAGAGGAAT
 TGTTAAGGAA TGTTGATTAA AATCAAGATA TCTCCTGATT TGACATAAAC TGGGAAAAGA
 AGGGAGTTTT GAAAATATCT CTAAAGTAGT GCATTAAATT AATACTTCCT ATGGGCCACC
 TACCTTCCAG ATTTGTGA

  Submitted Frequency for ss3288652 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
TSC_42_A
EAST ASIA
84A=1.00000000
TSC-KWOK-TSC_42_A-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_AA
NORTH AMERICA
84A=0.60000002
C=0.40000001
0.480 +/-0.030TSC-KWOK-TSC_42_AA-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
TSC_42_C
NORTH AMERICA
84A=0.50000000
C=0.50000000
0.500 +/-0TSC-KWOK-TSC_42_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss3288652 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU222222T=0.58558559
G=0.41441441G/T=0.50450450
T/T=0.33333334
G/G=0.16216215
Pr(chiSq=0.173,df=1)
=0.752
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686T=0.95348835
G=0.04651163T/T=0.90697676
G/T=0.09302326
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172T=0.95348835
G=0.04651163T/T=0.90697676
G/T=0.09302326
Pr(chiSq=0.019,df=1)
=1.000
Genotype
Freq.
HapMap-YRI224224T=0.79464287
G=0.20535715T/T=0.61607140
G/T=0.35714287
G/G=0.02678571
Pr(chiSq=0.996,df=1)
=0.343
Genotype
Freq.
HAPMAP-ASW9898T=0.72448981
G=0.27551019T/T=0.55102038
G/T=0.34693879
G/G=0.10204082
Pr(chiSq=0.840,df=1)
=0.371
Genotype
Freq.
HAPMAP-CHB8282T=0.87804878
G=0.12195122T/T=0.78048778
G/T=0.19512194
G/G=0.02439024
Pr(chiSq=0.324,df=1)
=0.584
Genotype
Freq.
HAPMAP-CHD170170T=0.98235291
G=0.01764706T/T=0.96470588
G/T=0.03529412
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH176176T=0.65340906
G=0.34659091G/T=0.44318181
T/T=0.43181819
G/G=0.12500000
Pr(chiSq=0.041,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180T=0.79444444
G=0.20555556T/T=0.62222224
G/T=0.34444445
G/G=0.03333334
Pr(chiSq=0.269,df=1)
=0.655
Genotype
Freq.
HAPMAP-MKK284284T=0.77112675
G=0.22887324T/T=0.60563380
G/T=0.33098590
G/G=0.06338028
Pr(chiSq=0.551,df=1)
=0.479
Genotype
Freq.
HAPMAP-TSI176176T=0.64204544
G=0.35795453T/T=0.47727272
G/T=0.32954547
G/G=0.19318181
Pr(chiSq=7.050,df=1)
=0.010
Genotype
Freq.

  Submitted individual genotype for ss3288652 back to top
There is no individual genotype data for ss3288652.

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