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Submitted SNP(ss) Details: ss341923335           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-871173
RefSNP(rs#)rs141982349
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923335|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CGTGGGGTCC CAGGTCCCAG TGCCAGGTTC TGTGTCGCTT TGACTCGGGT GCTGCGTGGG
 TGTGCACACA GTGGCGTCAC GGGCCACATG CCGAGGCGTG GGCACAGCAA CGTGGCACTC
 AGAGGTCATC CCCACGCTCA CACACAGAGC TAGGCACTCC CTGTGCCCAG GCTGGGCTCC
 AGCCTCGCAG CTGCCCACGG GGTCAGCTTT TCCCGGTCTC GTTCTGCAGC CAGGACGGCA
 ACCTTCCCAC
 Y
 CTCATATCCA GCGTCCACCG CAGCCGCCAC CTCGTTATGC CCGAGCATCA GAGCCGCTGT
 GAATTCCAGA GAGGCAGCCT GGAGATTGGC CTGCGACCCG CCGGTGAGGA GCACAGGGGG
 CCTGAGGGCG GGGTCGGGGC TGTGGGGCCA GAGGACGGTG GCGTCTCCAC TCAGCACCAG
 CAGCCTTGGC AGGCAGCCAG AGAGGCAGGA GGAGCGGCCT GTCCCCCAGG GGCTGCATGG
 GATGGTAATT

  Submitted Frequency for ss341923335 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006C/C=0.99969202
C/T=0.00030800
T/T=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923335 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45504550C=0.99978024
T=0.00021978C/C=0.99956042
C/T=0.00043956
T/T=0.00000000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341923335 back to top
There is no individual genotype data for ss341923335.