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Submitted SNP(ss) Details: ss341923361           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-874456
RefSNP(rs#)rs149677938
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4286
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341923361|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 TGTCAGAGCT CCCCTGTGCC CCTGTCCCGC CACAGCCAGG CGTGATGTCC TCTGCGCTGA
 AGGCTGGGGC TGCCAGGGCT GGGCAAGGCC TGTACTCACC AGGACCAAGG GCCCCCTGAG
 AGATGGTGGG TGCGGTCCAG GCTGAGCTGG AGCAGGGGCT GGGTTCCCCT TCCATTCCTT
 GAGATGCAGG TGGGCACTCA CTACCCTCCC GCAGGTGACC TGTTGGGCAA GAGGCTGGGC
 CGCTCCCCCC
 R
 TATCAGCAGC GACTGCTTTT CAGAGAAGAG GGCACGAAGC GAATCGCCTC AAGGTAAGAG
 CGTGGCTGGG ACGAGAGACA GGTCACCAGG GGAGGGGGCA GTCCCTGAGG GTCCCCTGGA
 CCTCGAGCAG GCACTCTAGA GGGGCGTGGT CCTCGGCAGT GCCTGGAGAA ACCTCTCACC
 CCGGGTCCTC CCCAGCAGAG GCGCTGCTGC TGCCGCGGGA GCTGGGGCCC AGCATGGCCC
 CGGAGGACCA

  Submitted Frequency for ss341923361 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13002G/G=0.99738503
A/G=0.00261500
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341923361 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
42864286G=0.99813348
A=0.00186654G/G=0.99626690
A/G=0.00373308
A/A=0.00000000
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341923361 back to top
There is no individual genotype data for ss341923361.