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Submitted SNP(ss) Details: ss341924366           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-1115461
RefSNP(rs#)rs116383664
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3664
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341924366|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 GTGGTCACGG CCCCTCCCCA GATGTAAGCA GTCCCCAGGC CGCCTGGTGG GGCCAGAGCT
 CGGGCTGAAC TTGAGCCCCA GACGGGCCAG GGGGATTGTC CAGGGTATTG GAGAAATGGG
 CTGGGAGCAA ACTGGCTGAG CCATGTCCGG GCTGAGTGGG CAGCTCCCGT AGCCACCCCG
 GTGGGACCCC ACCCCGTTCA CAGGCCCGGC CCACGAGAGG CCAATGGGGA GCAGCCAGGA
 GGAGGGACTC
 Y
 GGTGTCAGCC AAGCCAGCCA GACCACGACG CAGATGGACA CTGTGGGCCG GACCTGGAGG
 GGGCAGAAAG AGCCTCTGCC ACACCCGGAC CCCCTGGGCT CCTGAACAGC CACCGGCCTG
 CAGACTCGGA TGACACTAAC GCCGCCGGGC CCTCAGCTGC CCTCCTGGAG GGGCTCCTGC
 TGGGGGGTGG GAAGCCATCG CCCCACAGCA CCCGGCCGGG GCCCTTCTTC TACATTGGAG
 GCAGCAACGG

  Submitted Frequency for ss341924366 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		12982C/C=0.98351598
C/T=0.01617600
T/T=0.00030800
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341924366 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		36643664C=0.98608077
T=0.01391921C/C=0.97325325
C/T=0.02565502
T/T=0.00109170
Pr(chiSq=7.841,df=1)
=0.010		Genotype
Freq.

  Submitted individual genotype for ss341924366 back to top
There is no individual genotype data for ss341924366.

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