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Submitted SNP(ss) Details: ss341924370           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-1115503
RefSNP(rs#)rs111751804
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3880
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341924370|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 CCTGGTGGGG CCAGAGCTCG GGCTGAACTT GAGCCCCAGA CGGGCCAGGG GGATTGTCCA
 GGGTATTGGA GAAATGGGCT GGGAGCAAAC TGGCTGAGCC ATGTCCGGGC TGAGTGGGCA
 GCTCCCGTAG CCACCCCGGT GGGACCCCAC CCCGTTCACA GGCCCGGCCC ACGAGAGGCC
 AATGGGGAGC AGCCAGGAGG AGGGACTCCG GTGTCAGCCA AGCCAGCCAG ACCACGACGC
 AGATGGACAC
 Y
 GTGGGCCGGA CCTGGAGGGG GCAGAAAGAG CCTCTGCCAC ACCCGGACCC CCTGGGCTCC
 TGAACAGCCA CCGGCCTGCA GACTCGGATG ACACTAACGC CGCCGGGCCC TCAGCTGCCC
 TCCTGGAGGG GCTCCTGCTG GGGGGTGGGA AGCCATCGCC CCACAGCACC CGGCCGGGGC
 CCTTCTTCTA CATTGGAGGC AGCAACGGGG CCACAATGTG AGTAGCGGCC CTGGGCGCCC
 GTGGTCCCAC

  Submitted Frequency for ss341924370 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
12992T/T=0.96474802
C/T=0.03432900
C/C=0.00092400
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341924370 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
38803880T=0.98530930
C=0.01469072T/T=0.97061855
C/T=0.02938144
C/C=0.00000000
Pr(chiSq=0.431,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss341924370 back to top
There is no individual genotype data for ss341924370.

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