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Submitted SNP(ss) Details: ss341924374           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-1115548
RefSNP(rs#)rs114390380
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3488
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341924374|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 CAGGGGGATT GTCCAGGGTA TTGGAGAAAT GGGCTGGGAG CAAACTGGCT GAGCCATGTC
 CGGGCTGAGT GGGCAGCTCC CGTAGCCACC CCGGTGGGAC CCCACCCCGT TCACAGGCCC
 GGCCCACGAG AGGCCAATGG GGAGCAGCCA GGAGGAGGGA CTCCGGTGTC AGCCAAGCCA
 GCCAGACCAC GACGCAGATG GACACTGTGG GCCGGACCTG GAGGGGGCAG AAAGAGCCTC
 TGCCACACCC
 R
 GACCCCCTGG GCTCCTGAAC AGCCACCGGC CTGCAGACTC GGATGACACT AACGCCGCCG
 GGCCCTCAGC TGCCCTCCTG GAGGGGCTCC TGCTGGGGGG TGGGAAGCCA TCGCCCCACA
 GCACCCGGCC GGGGCCCTTC TTCTACATTG GAGGCAGCAA CGGGGCCACA ATGTGAGTAG
 CGGCCCTGGG CGCCCGTGGT CCCACTGAAT ACCCACCGCC TGCTCCCGGG GCCCAGCCCG
 GCCTCCGCTG

  Submitted Frequency for ss341924374 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		12976G/G=0.96038800
A/G=0.03884100
A/A=0.00077100
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341924374 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		34883488G=0.98337156
A=0.01662844G/G=0.96674311
A/G=0.03325688
A/A=0.00000000
Pr(chiSq=0.499,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss341924374 back to top
There is no individual genotype data for ss341924374.

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