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Submitted SNP(ss) Details: ss341924438           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-1120377
RefSNP(rs#)rs116321663
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4538
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341924438|allelePos=251|len=501|taxid=9606|alleles='T/A'|mol=Genomic
 CCCCAGTTCA TGCAGAAGCC TTCTAGGTTA GGGGGATGTT CTCTTGGGGA CCCCCGTGAG
 GACAGGCCCT CCGGACAGTC TGGGAGCCAG TCTCCAGGCA CCGTGTGCCC CCAGTTCATG
 CAGAAGCCTT CTAGGTTAGG GGGATGTTCT CTTGGGGACC CCCGTGAGGA CAGGCCCTCC
 GGACAGTCTG GGAGCCAGTC TCCAGGCACC GTGTGCCCCC AGTTCATGCA GAAGAAGAGC
 CCTCTGTACA
 W
 GCTGCTGAAG GAGCACACGG TGTGGAGCAT GGAACACCTC AACCGCTACA TCAGTGACAC
 GTTCTGGAAG GCCCGGGGCC TCGCCAAGGA CTGGGTCTTC ACCACCCTCA AGGTGCGTCC
 ACTGTGCCCT CCAGTCTGGG AGTGAGATCC CTCGGGGCGG GGGTGTGTGG TCAGGCTGGG
 CACCAGGCAC ACAGATGTCC GTGGCGTGCG TGGGCGGCTG CGCTGAAGTG TGACCTGACC
 GTGTGGAACC

  Submitted Frequency for ss341924438 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13004T/T=0.96247298
A/T=0.03737300
A/A=0.00015400
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341924438 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45384538T=0.98479509
A=0.01520494T/T=0.96959013
A/T=0.03040987
A/A=0.00000000
Pr(chiSq=0.541,df=1)
=0.479		Genotype
Freq.

  Submitted individual genotype for ss341924438 back to top
There is no individual genotype data for ss341924438.

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