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Submitted SNP(ss) Details: ss341928696           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-6525619
RefSNP(rs#)rs116290124
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize2658
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341928696|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 CTCTCCAGCT CCCTACTTCT CTGTCAGCCT ACCCCTACCT CCCCTGCCAG CCTCCTCTTA
 CCTCCCGGGC CTGCCCGCCA CCTCTCCAGC CCTGCCTGCC CCATGCCTCT CCCACCCCTG
 TGGCCACTTA CCCGCTGGGC AGCCTCTGCA ACAAAACAGA CCAATCTTCT TGTGGAAGTC
 ACCGGCACAG TCACACCTGG GGCTACGAGT GCCGCCCTGG GCCCGGGCCC CCAGCAGCAC
 CAGGAGGAGC
 R
 CCTGGGGGAC AGGTGCTGCT GACTCTCAGC GCAGCTGCCC ACGTGGGGCC TCTCCCTGCT
 GCGTCTCCTC CATTTCAGAG GCCCCAGCAT TTGCCCACAG AGCAGCCCAC TTCCCAGGCC
 CCGGGCAGAA GGGGTGCCCA TGGGTGGAGA GGAAACTAAC TTCCTTCCCC CCGCGCACAC
 ACCAGGCTTC GGAGGGGGCG CTTACCAGCC CCTCACAAGT TTCCCCTCCA CCAGAGCAGG
 AATCCAGCAG

  Submitted Frequency for ss341928696 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
12988G/G=0.99923003
A/G=0.00077000
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341928696 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
26582658G=0.99924755
A=0.00075245G/G=0.99849510
A/G=0.00150489
A/A=0.00000000
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341928696 back to top
There is no individual genotype data for ss341928696.