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Submitted SNP(ss) Details: ss341932883           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-11710060
RefSNP(rs#)rs61731861
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4552
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341932883|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 CCCATGCCAC CCCAGGACCC TCTCACCAGT CCTTCACCAC GATGGCCGGC TGAGTCGTGT
 CCAGCAGCTC CTCCCAGTAG CCCTCAGCCT GCAGGTCAAT GACCTGTGCT TTGCGACACC
 ACCTGGGAGA ACTGGAGTTA GGACAGAGCG AACGCTCCCC CCTTCCCACC TCCTCCACCC
 CCTTCTCCTT ACTCAAAGGA GGAGGCGAAG TACTTCTTGA CGCTCTCATC GTGGGTGAAC
 TCCACCCCAC
 Y
 GTCTCCAGGC AGCTCCTCCA CCCTCCAGCC GTCCCCACCA TGCTCCACGT CACACCAGCC
 TTCCAAGTCC TCTGTAGGGA CACGACAGCC CCACCCTGGT CACTCAGTCC CTGCTAAGGC
 TGGCTCTTGC CACTATGTGG TGGGGGGCAG GGCAAAGGTC GCACTTGGTG TCTTGGTGGG
 CAGATGATGA ATGAGAGGGT GGACCAGTGG GCAGTTTCTA AATCTGCCTC CCGGGAGGTA
 TGTCCCCCAT

  Submitted Frequency for ss341932883 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006T/T=0.99246502
C/T=0.00753500
C/C=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341932883 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45524552T=0.99648505
C=0.00351494T/T=0.99297011
C/T=0.00702988
C/C=0.00000000
Pr(chiSq=0.028,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341932883 back to top
There is no individual genotype data for ss341932883.