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Submitted SNP(ss) Details: ss341939131           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-17914122
RefSNP(rs#)rs35497285
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4540
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341939131|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 GCCATGCCCA CCTACCCCAG CCATCTCTCC ATTGACCAAA CCTCGGAGAT CCTGCAGCCT
 GGCCAACTCC TTCTCTCTTC CAGGAGATCA GCTGGTTCCA GGAGTCCCAG GCCCCTCCTC
 TGAGGCAGAG GACGACCCAG GAGAGGCGTT TGAGTTTGAT GACAGTGATG ATGAAGAGGA
 CACCAGCGCA GCCCTGGGCG TCCCCAGCCT TGCTCCTGAG AGGGACACAG ACCCCCCACT
 GATCCACTTG
 R
 ACTCCATCCC TGTCACTGGT AAGATGTTTC TGGGAACTTC CGGTCCTGGG GCTACAGGGA
 GCATGGAGAA CTGGGCGGAA GCTCCAGGCT CTCAGGGATG CCTGGTGGCC CCTCCGCTGT
 CCCCAGAAAG CAGGAAGGGA AAAGCCAGTG GGAAGAAGCT GCAGTCTGTG GCTTCCCTGG
 TGAATTGGAA ATTCCTAGCA TTCCTGCAAC ATCTGGCGCA CTTTGGCACA TTGTAAATGG
 AAGTGGTTGG

  Submitted Frequency for ss341939131 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006G/G=0.88297701
A/G=0.11010300
A/A=0.00692000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341939131 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45404540G=0.95022029
A=0.04977974G/G=0.90528637
A/G=0.08986784
A/A=0.00484581
Pr(chiSq=5.688,df=1)
=0.020
Genotype
Freq.

  Submitted individual genotype for ss341939131 back to top
There is no individual genotype data for ss341939131.

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