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Submitted SNP(ss) Details: ss341939214           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-17952531
RefSNP(rs#)rs725021
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341939214|allelePos=251|len=501|taxid=9606|alleles='A/C'|mol=Genomic
 TCCCTGGCTG CAGAACCACG GACCTCTCTC AGCTCTTCTT GCAAGCCCAG GGATAGGCAG
 GGTCTTAGGG CCTGGGGAGA GGAGCCCAGA ATGGGGACAG TGTCTGGACT CTGGGGCACT
 GGGCCCTCTC TGCAGGGGGT CAGCGAATGA CGGAACCTTG TCTCCACCAG CGACGGCAGG
 TGTGCAGCCC AGACCGTGTC ACCCTCTACG GGCTGATGGT CAAGCCCATC CAGAGGTTCC
 CACAGTTCAT
 M
 CTCCTGCTTC AGGTACTGCT CAGGATTCCA GCAGCTTCAA CCCACAGGGT TTGCCTGTGG
 GCTGGGAGGT GCCTCCTGGG GTAGGAGGGA GGAGGTCTGG GCTCTTGTCC GTGATCCATA
 ACCCACCCAA CCTGCTGTGG GACTCTGGCC TCATCTTTCT CCACTTCTAG AGTGAAATTG
 ATTGTAACTG ACAGCTCAGT TTGCACGCCC CTCTGTGGGG GACGCTGAGG GACTGCTGGT
 GGCCTGAGTC

  Submitted Frequency for ss341939214 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006A/A=0.91880703
A/C=0.07565700
C/C=0.00553600
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341939214 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45504550A=0.94923079
C=0.05076923A/A=0.90285712
A/C=0.09274726
C/C=0.00439560
Pr(chiSq=3.238,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss341939214 back to top
There is no individual genotype data for ss341939214.

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