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Submitted SNP(ss) Details: ss341941778           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-20992819
RefSNP(rs#)rs631357
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4552
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341941778|allelePos=251|len=501|taxid=9606|alleles='G/C'|mol=Genomic
 CTCATTTTGT AGCTAAGGAA ACTGAGGCTC CGAGAGGGAA AGGAGTTTTT GAACCCAGGC
 CTGTCTGACT TCAAAACTAT CCCCTTCACG CCTCTCCCAG TTGTGTGGAG AGGGTGGGGA
 CAGGGGAGGG ACACTCACTG AGGCTCTTCC TGGCGTCTGT GCTGAGGATC TGGCTGGCCC
 GCTTAGATCG GAAGTAGTTG CTGGCAATGT TTTCACTGTT GCTCCGACTG AGCATGAGCC
 TGTAGCGGTC
 S
 TCCTCCTGCC GAGATGCAGA TGCCCGTGGT CACGTCCCCT TGTTTGTGCC CCTGGCACAG
 GGCTCCACAG CCTCTGGTAT CCTGGGGCAG TGGGGGCCGC CCCGAGCTTC CCCGAAGTTG
 TCACAGGGCT GGAGCAGGCA CTGCCCACTC TGGTGTACCC TACACCGTAG ATCCTGGACT
 CGGGGGTGGG ATCCCAGGCA GCTCGGGGCC AGGAAGTCAG TCTCCAGCCA AGCCTGCACC
 CGGCCTCCCC

  Submitted Frequency for ss341941778 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.62755698
C/G=0.32538801
G/G=0.04705500
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341941778 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45524552C=0.78646749
G=0.21353251C/C=0.62082601
C/G=0.33128294
G/G=0.04789104
Pr(chiSq=0.425,df=1)
=0.527		Genotype
Freq.

  Submitted individual genotype for ss341941778 back to top
There is no individual genotype data for ss341941778.

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