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Submitted SNP(ss) Details: ss341941801           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-20998573
RefSNP(rs#)rs35595233
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4552
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341941801|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 TCTTCTACAC CCACAGCCTG CAAGGAGAGG CCCACACTCC CTGCCAGTCT GCAGGATGGT
 AAGCCGTGAA GGAGGGAGGG GAGGGCAAGG GCCAGCCAAG CTCCTGACCT ACTGGGAGGC
 TGGTTTTTGT GATGACGGGA TGTGGGATCT TCCAGAAGCC GTTATCTTCG TCCCAGCAGG
 ACTCACGCAG AATCTTCTCC AGGTTGCTGT AGTTACAGTC CCTGCGAATC AGGGGCTGCA
 CCTGCTCCAG
 R
 AGCTGCTGCA AGAGCATGGA GTCACGCTCC TGCCGGCGGA TGGTGGCCAA GTAATCGATC
 TTCTCCAGCT GAAACTCGGA CTGCAGATCT TTGATCTCCA CCTCTGCTGC CCGAAGCTGA
 AAGCAAAGGA TGACAAGCAG TGAGCAGGGA AAGATACCTC CCCTTCCATC TAACCACCCT
 GTCCACTCAC TGTCCTGCCA GCAGCCACGC ATCGTCTGTT CATTGGCCTG ATCAGCCATC
 CATTCTCATC

  Submitted Frequency for ss341941801 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006G/G=0.95186800
A/G=0.04613300
A/A=0.00199900
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341941801 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45524552G=0.97144115
A=0.02855887G/G=0.94595784
A/G=0.05096661
A/A=0.00307557
Pr(chiSq=15.103,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss341941801 back to top
There is no individual genotype data for ss341941801.

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