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Submitted SNP(ss) Details: ss342075780           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr2-116510817
RefSNP(rs#)rs2053724
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4536
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342075780|allelePos=251|len=501|taxid=9606|alleles='G/C'|mol=Genomic
 ATATATGTAA ATATTGAAAA GAGCAGATAT CTATTTATCT ATCTATCTAT ACATAAATTA
 ATATGTAGCA ACATCCTTAT AGTGGTTCAG TTATTCTTAT ATATAAAATG GCAAATGTAT
 ATTGTTGGTA CTATATCAAT GCTCTGGCTC TAAACATACA TTTTAATTTT GTTTCCAAAC
 TAGAGAATAC TATATCACTA TGGTTAAATG GGTAAGCAAT ACCAAGACTG TGGTAAGATG
 GTTAAACCGA
 S
 CTCAGAACAT CTCCATCCTC ACAGTCTGTG AGACCACTAC AGGTGCTTGT AGTAAAGTGA
 GTATAATTTA TTTTTCTTTT ATGCCTAAAA TGAAGTAGCT TATGCAGCTT TACAAAGGGG
 AAACAGGAAA TGCTTTGTAC AAAAAAAATT CAGTGTTTAA CTTTTAAAAC TAATAGGAAA
 AGAATTATTC TATTAAGAAT ATATACTTTA ATTTATAAAG CTTCCAAACT TTGAAGTGAA
 CAATATTGAT

  Submitted Frequency for ss342075780 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006C/G=0.43472201
G/G=0.30462900
C/C=0.26064900
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342075780 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45364536G=0.54695767
C=0.45304233C/G=0.42813051
G/G=0.33289242
C/C=0.23897707
Pr(chiSq=42.023,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss342075780 back to top
There is no individual genotype data for ss342075780.

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