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Submitted SNP(ss) Details: ss342163445           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr4-55141055
RefSNP(rs#)rs1873778
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342163445|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 TCATAAAACT AAAGATCTTT GAAGCCAATG AGAACAAGCA TAGCAACCTA GTTCAGTGCT
 TGGCACAGAG AAGGAGCTCA GCAATTACAT GTGGAGTGAA CGTTGTTGGA CTCTACTGTG
 TCCAGTCACT GTGCTGCTTC AGTGAAGCTC TGGTGCACTG GGACTTTGGT AATTCACCAG
 TTACCTGTCC TGGTCATTTA TAGAAACCGA GGTATGAAAT TCGCTGGAGG GTCATTGAAT
 CAATCAGCCC
 R
 GATGGACATG AATATATTTA TGTGGACCCG ATGCAGCTGC CTTATGACTC AAGATGGGAG
 TTTCCAAGAG ATGGACTAGT GCTTGGTAAG TTCCATGGGG TAACCTCCCA AGACTCCCTT
 TTCCCTTGCA CACAACTTTA CAATTTATAG GCCTTGGCAG AATAGAGATC TGAGCTTGTG
 CTTAGTAAGA ACTAGGCAAT GGAAATTTGC TTTCAGAAAT ACATTTCTGT CTTGACAGTA
 AGTTAATTGG

  Submitted Frequency for ss342163445 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006G/G=0.92126697
A/G=0.07519600
A/A=0.00353700
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342163445 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45504550G=0.94703299
A=0.05296703G/G=0.90065932
A/G=0.09274726
A/A=0.00659341
Pr(chiSq=12.973,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss342163445 back to top
There is no individual genotype data for ss342163445.

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