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Submitted SNP(ss) Details: ss342163459           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr4-55152040
RefSNP(rs#)rs2228230
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4552
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342163459|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CTACGCAGGT CAGGGAGTCT GAAATCATCA GGCATCTACT CTTCTCTAGA GCTTTCTCTC
 TGTTGGGAGT GGGTGGAGTG AGAACCTGGG AGAAGGCCAG CCCTTTATAT CCAGGCAGAC
 AGCTCCAAGT GCCACCATGG ATCAGCCAGT CTTGCAGGGG TGATGCTATT CAGCTACAGA
 TGGCTTGATC CTGAGTCATT TCTTCCTTTT CCATGCAGTG TGTCCACCGT GATCTGGCTG
 CTCGCAACGT
 Y
 CTCCTGGCAC AAGGAAAAAT TGTGAAGATC TGTGACTTTG GCCTGGCCAG AGACATCATG
 CATGATTCGA ACTATGTGTC GAAAGGCAGT GTACGTCCTC ACTTCCCTCA CTGGTCAGGC
 TCATCCTCCT TCACTTTAAT CTCTAAAGTC AGGTGTTGCT TCTAGAGATT CGGTGCCTGT
 TTTTTAAAAC ATCAATAGAT TTCAAGGGGT CAGTACACTG CCTTGGCAGC AGATTGCCCA
 GGTTTGAGTG

  Submitted Frequency for ss342163459 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006C/C=0.65046901
C/T=0.30247599
T/T=0.04705500
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342163459 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45524552C=0.79195958
T=0.20804042C/C=0.63224953
C/T=0.31942004
T/T=0.04833040
Pr(chiSq=2.138,df=1)
=0.150		Genotype
Freq.

  Submitted individual genotype for ss342163459 back to top
There is no individual genotype data for ss342163459.

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