NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss342186082           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr5-112175770
RefSNP(rs#)rs41115
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize3976
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342186082|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 GCAGTGGAAT GGTAAGTGGC ATTATAAGCC CCAGTGATCT TCCAGATAGC CCTGGACAAA
 CCATGCCACC AAGCAGAAGT AAAACACCTC CACCACCTCC TCAAACAGCT CAAACCAAGC
 GAGAAGTACC TAAAAATAAA GCACCTACTG CTGAAAAGAG AGAGAGTGGA CCTAAGCAAG
 CTGCAGTAAA TGCTGCAGTT CAGAGGGTCC AGGTTCTTCC AGATGCTGAT ACTTTATTAC
 ATTTTGCCAC
 R
 GAAAGTACTC CAGATGGATT TTCTTGTTCA TCCAGCCTGA GTGCTCTGAG CCTCGATGAG
 CCATTTATAC AGAAAGATGT GGAATTAAGA ATAATGCCTC CAGTTCAGGA AAATGACAAT
 GGGAATGAAA CAGAATCAGA GCAGCCTAAA GAATCAAATG AAAACCAAGA GAAAGAGGCA
 GAAAAAACTA TTGATTCTGA AAAGGACCTA TTAGATGATT CAGATGATGA TGATATTGAA
 ATACTAGAAG

  Submitted Frequency for ss342186082 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13002A/G=0.46854299
A/A=0.35194600
G/G=0.17951100
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342186082 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		39763976A=0.58752513
G=0.41247484A/G=0.48591548
A/A=0.34456742
G/G=0.16951710
Pr(chiSq=0.013,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342186082 back to top
There is no individual genotype data for ss342186082.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement