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Submitted SNP(ss) Details: ss342296557           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr10-43613843
RefSNP(rs#)rs1800861
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4540
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginA:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342296557|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 AGATCCGGCA TGTGTGGTTG CTGGCTCCTC AGGGTGCTTC TTCCTCAGGG TGGATGAGGC
 CCCTGTCCAC TGATCCCAAA GGCTGGGAGA AGCCTCAAGC AGCATCGTCT TTGCAGGCCT
 CTCTGTCTGA ACTTGGGCAA GGCGATGCAG GTCCATCCTG ACCTGGTATG GTCATGGAAG
 GGGCTTCCAG GAGCGATCGT TTGCAACCTG CTCTGTGCTG CATTTCAGAG AACGCCTCCC
 CGAGTGAGCT
 K
 CGAGACCTGC TGTCAGAGTT CAACGTCCTG AAGCAGGTCA ACCACCCACA TGTCATCAAA
 TTGTATGGGG CCTGCAGCCA GGATGGTAAG GCCAGCTGCA GGGTGAGGTG GGCAGCCACT
 GCACCCAGGC TGGGGGCTCC ATACAGCCCT GTTCTCCCTC TTTCTCCCTT TCCCTACTGC
 TCCTGCCCTG TTTCCTGTTC TCCCTCTTTC TGGAAGCCTG GCTCAGGCCC CAGCCTGGAG
 CTTGTGTCTA

  Submitted Frequency for ss342296557 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006T/T=0.64493299
G/T=0.31539300
G/G=0.03967400
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342296557 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45404540T=0.80484581
G=0.19515419T/T=0.64713657
G/T=0.31541851
G/G=0.03744493
Pr(chiSq=0.038,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss342296557 back to top
There is no individual genotype data for ss342296557.

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