NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss342373173           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr13-25009297
RefSNP(rs#)rs1050112
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342373173|allelePos=251|len=501|taxid=9606|alleles='G/T'|mol=Genomic
 GACTGTGCAG AGCTTAATGA GCTCCCTGAA AAAACAATGC CACAATAGGG TGAAGAAGGT
 GGGTTCTGGG GAGGTCCTGT GGGACAAGAC GCCGACTGTG GGATCCAGTC AGCACAAGTG
 CCAGGCACAG GGCCTTGGCT GAATTGAGAT GCATCAAACT GTCTGGGAGG AGCAGCTGAA
 CCGAAACTAG CTACCTGACG ATATGAGGCA AAAGACAAGG AAGCAGGACT GTGAGCGCGG
 GCAGTCGGGG
 K
 AAGATAGGAA CCAACGGCCG GAGCCAAAAT AGGAAAAAAG CTAGAAGTAG ATGTTTCCCA
 TGGACTGACT TTCTTAAATA GTGGTTCAGT TGCTGTTGGT TTACATGACT CTGTCCAACT
 TAAATCCAAT AGCTTTTCCA CACCTCCACG TTCCAAATTT GATGTGAAAG CTGGTAGTAC
 ACCTAAGCCA TCCTCTTCAA AATCTTCAGA AACTTCTGGC TGAGATAATT CCATTTTTCT
 TTTGGAAAAT

  Submitted Frequency for ss342373173 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13006G/T=0.48423800
G/G=0.35199100
T/T=0.16377100
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342373173 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		45504550G=0.59032965
T=0.40967032G/T=0.49318680
G/G=0.34373626
T/T=0.16307692
Pr(chiSq=0.879,df=1)
=0.371		Genotype
Freq.

  Submitted individual genotype for ss342373173 back to top
There is no individual genotype data for ss342373173.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement