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Submitted SNP(ss) Details: ss342373174           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr13-25009441
RefSNP(rs#)rs13428
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4546
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342373174|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 TGAGATGCAT CAAACTGTCT GGGAGGAGCA GCTGAACCGA AACTAGCTAC CTGACGATAT
 GAGGCAAAAG ACAAGGAAGC AGGACTGTGA GCGCGGGCAG TCGGGGGAAG ATAGGAACCA
 ACGGCCGGAG CCAAAATAGG AAAAAAGCTA GAAGTAGATG TTTCCCATGG ACTGACTTTC
 TTAAATAGTG GTTCAGTTGC TGTTGGTTTA CATGACTCTG TCCAACTTAA ATCCAATAGC
 TTTTCCACAC
 S
 TCCACGTTCC AAATTTGATG TGAAAGCTGG TAGTACACCT AAGCCATCCT CTTCAAAATC
 TTCAGAAACT TCTGGCTGAG ATAATTCCAT TTTTCTTTTG GAAAATGGAA TTTTCCTATG
 TTTTCGTTTG GATAAACGTA ATTCTGGCCA CTCAGAGGAT GCTAAAAGAG ACTGCCCAGA
 AGACAGAATT ATTAACGTAA GGGGAAAACA CAGAATAAAA AGAACAATCA AGCAAACATT
 CTTCCTAGCA

  Submitted Frequency for ss342373174 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006C/G=0.48408401
C/C=0.35199100
G/G=0.16392399
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342373174 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45464546C=0.58996922
G=0.41003078C/G=0.49274087
C/C=0.34359878
G/G=0.16366036
Pr(chiSq=0.774,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss342373174 back to top
There is no individual genotype data for ss342373174.