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Submitted SNP(ss) Details: ss342373226           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr13-25033227
RefSNP(rs#)rs1050107
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4464
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss342373226|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 GGCAAAATCA AAGAAACAGC TCAAATAGTC CAAATGATTC ACTGTCTCTG GAAACTGGTC
 TGGGGAGAAT CAGGGGCAGG AGTAGTGCTT CTTGTTAGAA GTTTTGTCAG CATTATTTCA
 CTTTTCAACC ACGTGCATAC ATTGCTTTGA TAAGATAAAA GTAGTGTTAA AATAACAGCT
 CTTAAGAAAT CAAAGATGCA CTAACCTTTT GTTTCAGTTC ATGTGTATCA CTGAAAATGA
 ATTCAATCAC
 R
 TACGGCATCT CAATAGACAT AGTCAAAGAG AAGCTAGCAA AAATGAAGAG AAAGTTGTCT
 TAGTCTACGA TCTTAAATTT CTATCTGAAA TTATTTCAAA CAATTCTAAA TGGAAATTTA
 AACCAGAAAA CCAATATCCA TTGAATTGAC AGGTTTTATA TTTTAGGTAC TAACCTTTGC
 TTTGTTCCTA TTTCTTTTAT ACAAATCTTC TCTACTGTAT CCTGTTAAAA GAAAAATACA
 TTTGTATAAC

  Submitted Frequency for ss342373226 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
ESP_Cohort_Populations
- NORTH AMERICA 		13002A/A=0.75788301
A/G=0.22273500
G/G=0.01938200
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss342373226 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
ESP_Cohort_Populations
- NORTH AMERICA 		44644464A=0.86783153
G=0.13216846A/A=0.75761646
A/G=0.22043011
G/G=0.02195341
Pr(chiSq=3.413,df=1)
=0.100		Genotype
Freq.

  Submitted individual genotype for ss342373226 back to top
There is no individual genotype data for ss342373226.

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