NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss35129783           
Submitter
HandleSSAHASNP
Submitter SNP IDTA-079.chr1_52066
RefSNP(rs#)rs28402963
Submitted Batch IDTA-079
Submitted DateMar 11, 2005
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 11 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTA-079
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityS1C_2-740j17.p1k -221 44

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35129783|allelePos=501|len=726|taxid=9606|alleles='T/C'|mol=Genomic
 AGAGTATTAT TGCACCAAAA GGCATGGACT TAAAATTCTT GATACATGAT TTCAAAATAT
 TTTCTTTAAG GTTTGAATCA GTCTATATTC CCTCCAGCAG CGTATAAAAG TGCCAATTTC
 TCTGATCCTT AGCCAGTTTG GGTAATAATA ATTGTAAAAC TTTTTTTTCT TTTTTTTTGA
 GACAGAGTCT CCCTCTGTCG CCAGGCTGAA GTGCAGTGGC GCAATCTCGG CTCACTGCAA
 CCTCCGCCTC CCGGGGTCAA GCTATTCTCC TGCCTCAGCC TCCCAAGTAG CTGGGACTAC
 AGGCATGCAC CACCATGCCC AGCTAATTTT TGTTATTTTT AGTAGAGATG GAGTTTCCCC
 ATGTTGGACA GGATGGTCTC GATCTCTTGA CCTCGTGATC CACCCTCCTC GGCCTCCCAA
 AGTGCTGGGA TAACAGGCGT GAACAACCAT GCCCGGCCTG TAAAACTTTT TCCTAATTTA
 ACAGAAAAAT AATAGTATTA
 Y
 ATTTTATCAT ATTTCTTTGA TTTCTAAGAC ACACATACAC ACACACACAC ACATATCTGT
 ATATACAAAT ACACGTATAG CTTACATTTT AATTCTTCAT TTCATTTGTT CATTTATTAG
 GTCTTGGAGA TTTTGTGAAA CTGTTTAAAT TCTTTTTTAT ACTATGAAGA TATCAACCTT
 TTGTCTCTAC AGCATTTCAA ATTCAAGTAT GATTCACGTG TTGGT

  Submitted Frequency for ss35129783 back to top
There is no frequency submission for ss35129783.


  dbSNP summary of Genotypes for ss35129783 back to top
No sufficient data to compute Hardy-weinberg probability for ss35129783.


  Submitted individual genotype for ss35129783 back to top
There is no individual genotype data for ss35129783.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement