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Submitted SNP(ss) Details: ss37044389           
Submitter
HandleBROAD
Submitter SNP IDmt4917
RefSNP(rs#)rs28357980
Submitted Batch IDHapMap-SNP-2004-08-20
Submitted DateApr 25, 2005
Publication Cited[1] The International HapMap Project
First entry to dbSNPApr 25 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodBROAD_ENCODE_PCR_RESEQ-2004-08-32C
Ascertainment Samplesize32
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss37044389|allelePos=271|len=500|taxid=9606|alleles='A/G'|mol=Genomic
 TTCCTCACGC AAGCAACCGC ATCCATAATC CTTCTAATAG CTATCCTCTT CAACAATATA
 CTCTCCGGNC AATGAACCAT AACCAATACT ACCAATCAAT ACTCATCATT AATAATCATA
 ATNGCTATAG CAATAAAACT AGGAATNGCC CCCTTTCACT TCTGAGTCCC AGAGGTTNCC
 CAAGGCACCC CTCTGACATC CGGCCTGCTT CTTCTCACAT GACAAAAACT AGCCCCNATC
 TCAATCATAT ACCAAATCTC TCCCTCACTA
 R
 ACGTAAGCCT NCTCCTCACT CTCTCAATCT TATCCATCAT AGCAGGCAGT TGAGGTGGAT
 TAAACCAAAC CCAGCTACGC AAAATCNTAG CATACTCCTC AATTACCCAC ATAGGATGNA
 TAATAGCANT TCTACCGTAC AACCCTAACA TAACCATTCT TAATTTAACT ATTTATATTA
 TCCTAACTAC TACCGCATTC CTACTACTCA ACTTAAACTC CAGCACCAC

  Submitted Frequency for ss37044389 back to top
There is no frequency submission for ss37044389.


  dbSNP summary of Genotypes for ss37044389 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU118118A=0.88983053
G=0.11016949A/A=0.88135594
G/G=0.10169491
A/G=0.01694915
Pr(chiSq=49.240,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss37044389 back to top
There is no individual genotype data for ss37044389.

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