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Submitted SNP(ss) Details: ss3754555           
Submitter
HandleSC_JCM
Submitter SNP IDAC034136.6_2907
RefSNP(rs#)rs2661837
Submitted Batch ID21-SEP-2001d
Submitted DateSep 25, 2001
Publication Cited[1] Clone overlap SNPs detected from the public human 19-Mar-2001 draft sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPSep 25 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlap_SNPs_by_SsahaSNP
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
seqversion:AC034136.6position:2907unfin_quality:77seqversion:AC040893.1position:-159036unfin_quality:86

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss3754555|allelePos=201|len=401|taxid=9606|alleles='G/C'|mol=Genomic
 CTGGCCATGC TTCAGGCTTC TGATTCACCC ATACTTCCAG GAGCCATGAA TCTGAAATCT
 GGAGCTGGTC TGTAGAAAGC ATTCTATTTA GTGAAATGTT GAAGGAATTT TAGGTCAACT
 ATCATGTATT TCATTGTCTC CAATGCCATA ATTTCCAAGT GCCTACTTGA ACAGTAGATA
 CTTTCAGGGG ATTTTCATAT
 S
 AATGATTGCA TTTTGCCATT GTTCTTTATT TTTTCAGTAA TGCTCCATCT GTAAACAACC
 CAAATTTCAA AGCCTGACAT AGTGTATTGA CAAATTATTC CTGGATGCCT GTTTTTATCA
 GGCCAAAATC CATAGTTATT CTAAAATGGA TATCATACAA ATAATGCTGC TGTAGCATGC
 TAACATTTTC CAGACTATTA

  Submitted Frequency for ss3754555 back to top
There is no frequency submission for ss3754555.


  dbSNP summary of Genotypes for ss3754555 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
9090C=0.92222220
G=0.07777778C/C=0.84444445
C/G=0.15555556
Pr(chiSq=0.048,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090C=0.98888886
G=0.01111111C/C=0.97777778
C/G=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss3754555 back to top
There is no individual genotype data for ss3754555.