Submitted SNP(ss) Details: ss38349717

Submitted SNP(ss) Details: ss38349717

Submitter
Handle	EGP_SNPS
Submitter SNP ID	PTEN-032425
RefSNP(rs#)	rs1903858
Submitted Batch ID	PTEN-EGP_YORUB-060105
Submitted Date	Jul 07, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Jul 7 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ073384
Submitted Gene Name	PTEN
Submitted Gene ID	5728
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTTAGCCATG AAAAATTAGA AGTTGAACTC TTGTCTTTTC AGGCAGGTGT CAATTTTGGG
 GTTTTGTTTT GATTTTTGGT TTTTGACATA AAGTACTTTA GTTCTGTGAT GTATAAACCG
 TGAGTTTCTG TTTTTCTCAT ATACCTGAAT ACTGTCCATG TGGAAGTTAC CTTTTATCTT
 TACCAGTATT AACACATAAA TGGTTATACA TAAATACATT GACCACCTTT TATTACTCCA
 GCTATAGTGG GGAAA
 R
 CTTTCTTTTC ATAACTAGCT AATGTTTTAA AAAGTATTCT TTTAGTTTGA TTGCTGCATA
 TTTCAGATAT TTCTTTCCTT AACTAAAGTA CTCAGATATT TATCCAAACA TTATTGCTAT
 GGGATTTCCT GCAGAAAGAC TTGAAGGCGT ATACAGGAAC AATATTGATG ATGTAGTAAG
 GTAAGAATGC TTTGATTTTC TATTTCAAAT ATTGATGTTT ATATTCATGT TGTGTTTTCA
 TTTAGAAAAG ATTTC

Submitted Frequency for ss38349717

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	30	A=0.53333300	G=0.46666700	PTEN-EGP_AD-060105	EGP_SNPS
EGP_CEPH-PANEL	44	A=0.63636398	G=0.36363599	PTEN-EGP_CEPH-060105	EGP_SNPS
EGP_HISP-PANEL	44	G=0.54545498	A=0.45454499	PTEN-EGP_HISP-060105	EGP_SNPS
EGP_YORUB-PANEL	24	A=0.66666698	G=0.33333299	PTEN-EGP_YORUB-060105	EGP_SNPS
EGP_ASIAN-PANEL	48	A=0.52083302	G=0.47916701	PTEN-EGP_ASIAN-060105	EGP_SNPS

dbSNP summary of Genotypes for ss38349717

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	A=0.66666669	G=0.33333334	A/A=0.50000000 A/G=0.33333334 G/G=0.16666667	Pr(chiSq=0.750,df=1) =0.403	Genotype Freq.
EGP_HISP-PANEL	44	44	G=0.54545456	A=0.45454547	A/G=0.45454547 G/G=0.31818181 A/A=0.22727273	Pr(chiSq=0.153,df=1) =0.752	Genotype Freq.
EGP_CEPH-PANEL	44	44	A=0.63636363	G=0.36363637	A/A=0.45454547 A/G=0.36363637 G/G=0.18181819	Pr(chiSq=1.010,df=1) =0.317	Genotype Freq.
EGP_AD-PANEL	30	30	A=0.53333336	G=0.46666667	A/G=0.66666669 A/A=0.20000000 G/G=0.13333334	Pr(chiSq=1.727,df=1) =0.200	Genotype Freq.
EGP_ASIAN-PANEL	48	48	A=0.52083331	G=0.47916666	A/G=0.54166669 A/A=0.25000000 G/G=0.20833333	Pr(chiSq=0.174,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss38349717

There is no individual genotype data for ss38349717.

Disclaimer Privacy statement