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Submitted SNP(ss) Details: ss38349766           
Submitter
HandleEGP_SNPS
Submitter SNP IDPTEN-064823
RefSNP(rs#)rs34382179
Submitted Batch IDPTEN-EGP_YORUB-060105
Submitted DateJul 07, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize22
PopulationEGP_YORUB-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38349766|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGACCTTATC TTTAACTTTT TGTTTTTCTT TTGACTTTGG GAGTAGAGAT GTGAAAAGGT
 AAAAAGGAAG GAAGGAAGAG AAAACTTAAC TCTTTTTGCC CATGAAGACT GTTTTTCCTT
 CTCAAAATAT TGACTATTTT CTGATTTGTA AAAATCGGCA CATAAAACGT GTTATTTTTT
 ACTTGACTTT TATCTTTCCC ATGTGATATC TATAAATTAT AGATAGGAAA AATTTATCTG
 TAATTTAGTG ATCTT
 Y
 CTAGTGTGAT AAAACGTCAG AAGTACTGAG AGTGGAGTGG ACATTGATAT TGTTACTCTC
 AGTAAGTTTT CACTGATTTT TCTCAGAGTC ATGAAGGAAC AAACGTTTGT TAAGTCCTTA
 TCACTTATTA GATAACACAA AACATGTTGG GGGGGTGTGT ACAGAGGTGA GTAAGATGTA
 GCTCCCATTC TCAAGTCGCT TACATTCTAA TGTAAAAGGT AGACAAAGCA TTACAGAAGA
 AGTAACTCTG CTATA

  Submitted Frequency for ss38349766 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_CEPH-PANEL44T=1.00000000
C=0.00000000
PTEN-EGP_CEPH-060105EGP_SNPS
EGP_HISP-PANEL44T=1.00000000
C=0.00000000
PTEN-EGP_HISP-060105EGP_SNPS
EGP_ASIAN-PANEL48T=1.00000000
C=0.00000000
PTEN-EGP_ASIAN-060105EGP_SNPS
EGP_AD-PANEL30T=1.00000000
C=0.00000000
PTEN-EGP_AD-060105EGP_SNPS
EGP_YORUB-PANEL22T=0.95454502
C=0.04545500
PTEN-EGP_YORUB-060105EGP_SNPS


  dbSNP summary of Genotypes for ss38349766 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
EGP_YORUB-PANEL2222T=0.95454544
C=0.04545455T/T=0.90909094
C/T=0.09090909
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss38349766 back to top
There is no individual genotype data for ss38349766.