NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss38349835           
Submitter
HandleEGP_SNPS
Submitter SNP IDPTEN-099655
RefSNP(rs#)rs555895
Submitted Batch IDPTEN-EGP_YORUB-060105
Submitted DateJul 07, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize24
PopulationEGP_YORUB-PANEL
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38349835|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 ACAAAATGTT TCACTTTTGG GTAAATACAT TCTTCATACC AGGACCAGAG GAAACCTCAG
 AAAAAGTAGA AAATGGAAGT CTATGTGATC AAGAAATCGA TAGCATTTGC AGTATAGAGC
 GTGCAGATAA TGACAAGGAA TATCTAGTAC TTACTTTAAC AAAAAATGAT CTTGACAAAG
 CAAATAAAGA CAAAGCCAAC CGATACTTTT CTCCAAATTT TAAGGTCAGT TAAATTAAAC
 ATTTTGTGGG GGTTG
 K
 TGACTTGTAT GTATGTGATG TGTGTTTAAT TCTAGGAGTA CAGCTGATGA AGAACTTGCT
 TGACAAGTTT TTAACTTATG TATTATTTCG AAGCAGTGTT TACGTAGCAG TAACATGAAA
 GTTTCTAATA AAATACCCAA TGTACACAGC GTCAAAAAAG CTGCATTTTT CCTTTTCCTA
 ATTCTTTGTT GTTTGCTGAA ATCTGGGGCA AAGGTGCGGG AGGGGGCTAA ATGACTGGGA
 TATGAAGTAG GAATG

  Submitted Frequency for ss38349835 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_CEPH-PANEL44T=0.61363602
G=0.38636401
PTEN-EGP_CEPH-060105EGP_SNPS
EGP_HISP-PANEL42G=0.52381003
T=0.47619000
PTEN-EGP_HISP-060105EGP_SNPS
EGP_ASIAN-PANEL48T=0.52083302
G=0.47916701
PTEN-EGP_ASIAN-060105EGP_SNPS
EGP_AD-PANEL28G=0.50000000
T=0.50000000
PTEN-EGP_AD-060105EGP_SNPS
EGP_YORUB-PANEL24T=0.62500000
G=0.37500000
PTEN-EGP_YORUB-060105EGP_SNPS


  dbSNP summary of Genotypes for ss38349835 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
EGP_YORUB-PANEL2424T=0.62500000
G=0.37500000T/T=0.41666666
G/T=0.41666666
G/G=0.16666667
Pr(chiSq=0.148,df=1)
=0.752
Genotype
Freq.
EGP_HISP-PANEL4242G=0.52380955
T=0.47619048G/T=0.57142860
G/G=0.23809524
T/T=0.19047619
Pr(chiSq=0.444,df=1)
=0.527
Genotype
Freq.
EGP_CEPH-PANEL4444T=0.61363637
G=0.38636363G/T=0.40909091
T/T=0.40909091
G/G=0.18181819
Pr(chiSq=0.414,df=1)
=0.527
Genotype
Freq.
EGP_AD-PANEL2828T=0.50000000G/T=0.71428573
G/G=0.14285715
T/T=0.14285715
Pr(chiSq=2.571,df=1)
=0.150
Genotype
Freq.
EGP_ASIAN-PANEL4848T=0.52083331
G=0.47916666G/T=0.54166669
T/T=0.25000000
G/G=0.20833333
Pr(chiSq=0.174,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss38349835 back to top
There is no individual genotype data for ss38349835.