NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss38349857           
Submitter
HandleEGP_SNPS
Submitter SNP IDPTEN-106162
RefSNP(rs#)rs11202607
Submitted Batch IDPTEN-EGP_YORUB-060105
Submitted DateJul 07, 2005
Publication Cited[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNPJul 7 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize22
PopulationEGP_YORUB-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38349857|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TAAATTTTTA ACAAAGCTCT TAGGATTTAC ACATTTATAT TTAAACATTG ATATATAGAG
 TATTGATTGA TTGCTCATAA GTTAAATTGG TAAAGTTAGA GACAACTATT CTAACACCTC
 ACCATTGAAA TTTATATGCC ACCTTGTCTT TCATAAAAGC TGAAAATTGT TACCTAAAAT
 GAAAATCAAC TTCATGTTTT GAAGATAGTT ATAAATATTG TTCTTTGTTA CAATTTCGGG
 CACCGCATAT TAAAA
 Y
 GTAACTTTAT TGTTCCAATA TGTAACATGG AGGGCCAGGT CATAAATAAT GACATTATAA
 TGGGCTTTTG CACTGTTATT ATTTTTCCTT TGGAATGTGA AGGTCTGAAT GAGGGTTTTG
 ATTTTGAATG TTTCAATGTT TTTGAGAAGC CTTGCTTACA TTTTATGGTG TAGTCATTGG
 AAATGGAAAA ATGGCATTAT ATATATTATA TATATAAATA TATATTATAC ATACTCTCCT
 TACTTTATTT CAGTT

  Submitted Frequency for ss38349857 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
EGP_CEPH-PANEL44C=0.97727299
T=0.02272700
PTEN-EGP_CEPH-060105EGP_SNPS
EGP_HISP-PANEL44C=0.84090900
T=0.15909100
PTEN-EGP_HISP-060105EGP_SNPS
EGP_ASIAN-PANEL46C=0.89130402
T=0.10869600
PTEN-EGP_ASIAN-060105EGP_SNPS
EGP_AD-PANEL28C=0.92857099
T=0.07142900
PTEN-EGP_AD-060105EGP_SNPS
EGP_YORUB-PANEL22C=1.00000000
T=0.00000000
PTEN-EGP_YORUB-060105EGP_SNPS


  dbSNP summary of Genotypes for ss38349857 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
EGP_HISP-PANEL4444C=0.84090906
T=0.15909091C/C=0.72727275
C/T=0.22727273
T/T=0.04545455
Pr(chiSq=0.499,df=1)
=0.527
Genotype
Freq.
EGP_CEPH-PANEL4444C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
EGP_AD-PANEL2828C=0.92857140
T=0.07142857C/C=0.85714287
C/T=0.14285715
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
EGP_ASIAN-PANEL4646C=0.89130437
T=0.10869565C/C=0.82608694
C/T=0.13043478
T/T=0.04347826
Pr(chiSq=2.457,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss38349857 back to top
There is no individual genotype data for ss38349857.